Ziyi Li
| Snapshot Date: 2026-01-06 13:40 -0500 (Tue, 06 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/partCNV |
| git_branch: devel |
| git_last_commit: 1e12803 |
| git_last_commit_date: 2025-10-29 11:23:33 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-07 11:34 -0500 (Wed, 07 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1537/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| partCNV 1.9.0 (landing page) Ziyi Li
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the partCNV package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/partCNV.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: partCNV |
| Version: 1.9.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data partCNV |
| StartedAt: 2026-01-06 19:12:16 -0500 (Tue, 06 Jan 2026) |
| EndedAt: 2026-01-06 19:14:00 -0500 (Tue, 06 Jan 2026) |
| EllapsedTime: 104.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data partCNV
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* checking for file ‘partCNV/DESCRIPTION’ ... OK
* preparing ‘partCNV’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘partCNV_vignette.Rmd’ using rmarkdown
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Quitting from partCNV_vignette.Rmd:145-149 [s13]
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<error/rlang_error>
Error in `lm.wfit()`:
! NA/NaN/Inf in 'y'
---
Backtrace:
▆
1. └─partCNV::partCNVH(...)
2. ├─depmixS4::fit(mod)
3. └─depmixS4::fit(mod)
4. └─depmixS4 (local) .local(object, ...)
5. ├─depmixS4::em(...)
6. │ └─base::eval(call, parent.frame())
7. │ └─base::eval(call, parent.frame())
8. └─depmixS4:::em.depmix(...)
9. ├─depmixS4::fit(response[[i]][[k]], w = gamma[, i])
10. └─depmixS4::fit(response[[i]][[k]], w = gamma[, i])
11. └─depmixS4 (local) .local(object, ...)
12. └─stats::lm.wfit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'partCNV_vignette.Rmd' failed with diagnostics:
NA/NaN/Inf in 'y'
--- failed re-building ‘partCNV_vignette.Rmd’
SUMMARY: processing the following file failed:
‘partCNV_vignette.Rmd’
Error: Vignette re-building failed.
Execution halted