##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mzR.buildbin-libdir && mkdir mzR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mzR_2.45.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R mzR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mzR.buildbin-libdir mzR_2.45.1.tar.gz'
>>>>>>> 

Warning: SystemRequirements specified C++11: support has been removed
* installing *source* package ‘mzR’ ...
** this is package ‘mzR’ version ‘2.45.1’
** using staged installation
** libs
specified C++11
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
rm -f RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppPwiz.cpp -o RcppPwiz.o
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
RcppPwiz.cpp:420:57: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
  420 |         Rprintf("Index whichScan out of bounds [1 ... %d].\n", n_scans);
      |                                                       ~~       ^~~~~~~
      |                                                       %zu
In file included from RcppPwiz.cpp:1:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
RcppPwiz.cpp:437:42: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  437 |       data.insert(data.end(), ints->data.begin(), ints->data.end());
      |                                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
RcppPwiz.cpp:794:10: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
  794 |     if ( (precursorScanNum[i] > 0) | (precursorMZ[i] > 0) ) {
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                    ||
RcppPwiz.cpp:794:10: note: cast one or both operands to int to silence this warning
RcppPwiz.cpp:891:63: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
  891 |       Rprintf("Index whichChrom out of bounds [1 ... %d].\n", (clp->size()));
      |                                                      ~~       ^~~~~~~~~~~~~
      |                                                      %zu
13 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppPwizModule.cpp -o RcppPwizModule.o
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:29:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from RcppPwizModule.cpp:2:
In file included from ./RcppPwiz.h:12:
In file included from ./pwiz/data/msdata/MSDataFile.hpp:30:
In file included from ./pwiz/data/msdata/Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppIdent.cpp -o RcppIdent.o
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:14:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from RcppIdent.cpp:1:
In file included from ./RcppIdent.h:14:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppIdentModule.cpp -o RcppIdentModule.o
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:11:
In file included from ./pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from ./pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:14:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from RcppIdentModule.cpp:2:
In file included from ./RcppIdent.h:14:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/regex/src/posix_api.cpp -o boost/libs/regex/src/posix_api.o
boost/libs/regex/src/posix_api.cpp:182:27: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  182 |             int r = (std::sprintf)(localbuf, "%d", i);
      |                           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
boost/libs/regex/src/posix_api.cpp:194:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  194 |       int r = (std::sprintf)(localbuf, "%d", 0);
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
2 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/regex/src/regex_debug.cpp -o boost/libs/regex/src/regex_debug.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/regex/src/regex.cpp -o boost/libs/regex/src/regex.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/regex/src/wide_posix_api.cpp -o boost/libs/regex/src/wide_posix_api.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/regex/src/static_mutex.cpp -o boost/libs/regex/src/static_mutex.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/iostreams/src/zlib.cpp -o boost/libs/iostreams/src/zlib.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/iostreams/src/file_descriptor.cpp -o boost/libs/iostreams/src/file_descriptor.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/operations.cpp -o boost/libs/filesystem/src/operations.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/directory.cpp -o boost/libs/filesystem/src/directory.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/exception.cpp -o boost/libs/filesystem/src/exception.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/path.cpp -o boost/libs/filesystem/src/path.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/unique_path.cpp -o boost/libs/filesystem/src/unique_path.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/filesystem/src/utf8_codecvt_facet.cpp -o boost/libs/filesystem/src/utf8_codecvt_facet.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/chrono/src/chrono.cpp -o boost/libs/chrono/src/chrono.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/chrono/src/process_cpu_clocks.cpp -o boost/libs/chrono/src/process_cpu_clocks.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/chrono/src/thread_clock.cpp -o boost/libs/chrono/src/thread_clock.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Version.cpp -o pwiz/data/msdata/Version.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/Version.cpp -o pwiz/data/identdata/Version.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/MemoryIndex.cpp -o pwiz/data/common/MemoryIndex.o
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/MemoryIndex.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/common/MemoryIndex.cpp:25:
In file included from pwiz/data/common/MemoryIndex.hpp:26:
In file included from pwiz/data/common/Index.hpp:30:
In file included from ./boost/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/detail/shared_count.hpp:27:
In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27:
In file included from ./boost/checked_delete.hpp:15:
./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::MemoryIndex::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   36 |     delete x;
      |     ^
./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<pwiz::data::MemoryIndex::Impl>' requested here
  154 |             boost::checked_delete( p );
      |                    ^
./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<pwiz::data::MemoryIndex::Impl>' requested here
  279 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<pwiz::data::MemoryIndex::Impl, pwiz::data::MemoryIndex::Impl>' requested here
  373 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
pwiz/data/common/MemoryIndex.cpp:73:44: note: in instantiation of function template specialization 'boost::shared_ptr<pwiz::data::MemoryIndex::Impl>::shared_ptr<pwiz::data::MemoryIndex::Impl>' requested here
   73 | PWIZ_API_DECL MemoryIndex::MemoryIndex() : impl_(new Impl) {}
      |                                            ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/CVTranslator.cpp -o pwiz/data/common/CVTranslator.o
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/CVTranslator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/common/CVTranslator.cpp:145:53: warning: '&&' within '||' [-Wlogical-op-parentheses]
  145 |     return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ ~~
pwiz/data/common/CVTranslator.cpp:145:53: note: place parentheses around the '&&' expression to silence this warning
  145 |     return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
      |                                                     ^
      |             (                                                       )
pwiz/data/common/CVTranslator.cpp:146:40: warning: '&&' within '||' [-Wlogical-op-parentheses]
  145 |     return (key=="unit_" && value==MS_unit_OBSOLETE && cvid==UO_unit ||
      |                                                                      ~~
  146 |             key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
pwiz/data/common/CVTranslator.cpp:146:40: note: place parentheses around the '&&' expression to silence this warning
  146 |             key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14
      |                                        ^
      |             (                                        )
pwiz/data/common/CVTranslator.cpp:147:40: warning: '&&' within '||' [-Wlogical-op-parentheses]
  146 |             key=="pi_" && value==MS_PI && cvid==UO_pi || // MS_PI==photoionization, UO_pi==3.14
      |                                                       ~~
  147 |             key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
pwiz/data/common/CVTranslator.cpp:147:40: note: place parentheses around the '&&' expression to silence this warning
  147 |             key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
      |                                        ^
      |             (                                        )
pwiz/data/common/CVTranslator.cpp:148:40: warning: '&&' within '||' [-Wlogical-op-parentheses]
  147 |             key=="pi_" && value==MS_PI && cvid==MS_pI || // MS_pI==isoelectric point
      |                                                       ~~
  148 |             key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
pwiz/data/common/CVTranslator.cpp:148:40: note: place parentheses around the '&&' expression to silence this warning
  148 |             key=="de_" && value==MS_DE && cvid==1001274 || // conflict between 1000246 and 1001274
      |                                        ^
      |             (                                          )
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/cv.cpp -o pwiz/data/common/cv.o
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/cv.cpp:34:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/ParamTypes.cpp -o pwiz/data/common/ParamTypes.o
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/ParamTypes.cpp:26:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/ParamTypes.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/ParamTypes.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/common/ParamTypes.cpp:212:37: warning: unused variable 'it' [-Wunused-variable]
  212 |     vector<CVParam>::const_iterator it;
      |                                     ^~
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/BinaryIndexStream.cpp -o pwiz/data/common/BinaryIndexStream.o
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/common/BinaryIndexStream.cpp:25:
In file included from pwiz/data/common/BinaryIndexStream.hpp:26:
In file included from pwiz/data/common/Index.hpp:30:
In file included from ./boost/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/detail/shared_count.hpp:27:
In file included from ./boost/smart_ptr/detail/sp_counted_impl.hpp:27:
In file included from ./boost/checked_delete.hpp:15:
./boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'pwiz::data::BinaryIndexStream::Impl' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
   36 |     delete x;
      |     ^
./boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<pwiz::data::BinaryIndexStream::Impl>' requested here
  154 |             boost::checked_delete( p );
      |                    ^
./boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<pwiz::data::BinaryIndexStream::Impl>' requested here
  279 |     boost::detail::shared_count( p ).swap( pn );
      |     ^
./boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<pwiz::data::BinaryIndexStream::Impl, pwiz::data::BinaryIndexStream::Impl>' requested here
  373 |         boost::detail::sp_pointer_construct( this, p, pn );
      |                        ^
pwiz/data/common/BinaryIndexStream.cpp:417:82: note: in instantiation of function template specialization 'boost::shared_ptr<pwiz::data::BinaryIndexStream::Impl>::shared_ptr<pwiz::data::BinaryIndexStream::Impl>' requested here
  417 | PWIZ_API_DECL BinaryIndexStream::BinaryIndexStream(shared_ptr<iostream> isPtr) : impl_(new Impl(isPtr)) {}
      |                                                                                  ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/diff_std.cpp -o pwiz/data/common/diff_std.o
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/diff_std.cpp:26:
In file included from pwiz/data/common/diff_std.hpp:33:
In file included from pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/diff_std.cpp:27:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/diff_std.cpp:27:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/common/Unimod.cpp -o pwiz/data/common/Unimod.o
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:19:
In file included from ./boost_aux/boost/enum/base.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:19:
In file included from ./boost_aux/boost/enum/base.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:20:
In file included from ./boost_aux/boost/enum/bitfield.hpp:22:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:20:
In file included from ./boost_aux/boost/enum/bitfield.hpp:22:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/common/Unimod.cpp:25:
pwiz/data/common/Unimod.hpp:69:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   69 | BOOST_BITFIELD_DOMAIN_OPERATORS(Site)
      | ^
./boost_aux/boost/enum/macros.hpp:234:5: note: expanded from macro 'BOOST_BITFIELD_DOMAIN_OPERATORS'
  234 |     BOOST_ENUM_DOMAIN_OPERATORS(_name) \
      |     ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/common/Unimod.cpp:25:
pwiz/data/common/Unimod.hpp:78:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   78 | BOOST_ENUM_DOMAIN_OPERATORS(Position)
      | ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/common/Unimod.cpp:25:
pwiz/data/common/Unimod.hpp:97:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   97 | BOOST_BITFIELD_DOMAIN_OPERATORS(Classification)
      | ^
./boost_aux/boost/enum/macros.hpp:234:5: note: expanded from macro 'BOOST_BITFIELD_DOMAIN_OPERATORS'
  234 |     BOOST_ENUM_DOMAIN_OPERATORS(_name) \
      |     ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/common/Unimod.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/Unimod.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/Unimod.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/common/Unimod.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:20:
In file included from ./boost_aux/boost/enum/bitfield.hpp:22:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<const char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const std::string &, boost::algorithm::detail::is_classifiedF>' requested here
  131 |                 bal::split(formulaTokens, itr->second, bal::is_space());
      |                      ^
In file included from pwiz/data/common/Unimod.cpp:25:
In file included from pwiz/data/common/Unimod.hpp:31:
In file included from ./boost_aux/boost/enum.hpp:20:
In file included from ./boost_aux/boost/enum/bitfield.hpp:22:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<const char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_classifiedF>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/common/Unimod.cpp:131:22: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const std::string &, boost::algorithm::detail::is_classifiedF>' requested here
  131 |                 bal::split(formulaTokens, itr->second, bal::is_space());
      |                      ^
13 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/Configuration_mz5.cpp -o pwiz/data/msdata/mz5/Configuration_mz5.o
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/mz5/Configuration_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/Connection_mz5.cpp -o pwiz/data/msdata/mz5/Connection_mz5.o
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:27:
In file included from pwiz/data/msdata/mz5/../MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/mz5/Connection_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/Datastructures_mz5.cpp -o pwiz/data/msdata/mz5/Datastructures_mz5.o
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/mz5/Datastructures_mz5.cpp:25:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceRead_mz5.o
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
pwiz/data/msdata/mz5/ReferenceRead_mz5.cpp:51:20: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
   51 |         size_t n = sprintf(id, "%s:%07lu", cvrefs_[index].prefix,
      |                    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp -o pwiz/data/msdata/mz5/ReferenceWrite_mz5.o
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../../common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.cpp:24:
In file included from pwiz/data/msdata/mz5/ReferenceWrite_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/mz5/Translator_mz5.cpp -o pwiz/data/msdata/mz5/Translator_mz5.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/DefaultReaderList.cpp -o pwiz/data/msdata/DefaultReaderList.o
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/DefaultReaderList.cpp:29:
In file included from pwiz/data/msdata/DefaultReaderList.hpp:29:
In file included from pwiz/data/msdata/Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/ChromatogramList_mzML.cpp -o pwiz/data/msdata/ChromatogramList_mzML.o
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:26:
In file included from pwiz/data/msdata/ChromatogramList_mzML.hpp:29:
In file included from pwiz/data/msdata/ChromatogramListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/ChromatogramList_mzML.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/ChromatogramList_mz5.cpp -o pwiz/data/msdata/ChromatogramList_mz5.o
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/ChromatogramList_mz5.cpp:28:
In file included from pwiz/data/msdata/ChromatogramList_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/examples.cpp -o pwiz/data/msdata/examples.o
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/examples.cpp:25:
In file included from pwiz/data/msdata/examples.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/examples.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/examples.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Serializer_mzML.cpp -o pwiz/data/msdata/Serializer_mzML.o
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:26:
In file included from pwiz/data/msdata/Serializer_mzML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:28:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Serializer_mzML.cpp:28:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Serializer_MSn.cpp -o pwiz/data/msdata/Serializer_MSn.o
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:26:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Serializer_MSn.cpp:25:
In file included from pwiz/data/msdata/Serializer_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/msdata/Serializer_MSn.cpp:80:9: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
   80 |         sprintf(header.header[0], "CreationDate %s", ctime(&rawtime));
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
pwiz/data/msdata/Serializer_MSn.cpp:81:9: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
   81 |         sprintf(header.header[1], "Extractor\tProteoWizard\n");
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
pwiz/data/msdata/Serializer_MSn.cpp:82:9: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
   82 |         sprintf(header.header[2], "Extractor version\t%s\n", (msd.softwarePtrs.empty() ? "unknown" : msd.softwarePtrs.at(0)->id.c_str()));
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
pwiz/data/msdata/Serializer_MSn.cpp:83:9: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
   83 |         sprintf(header.header[3], "Source file\t%s\n", (msd.fileDescription.sourceFilePtrs.empty() ? "unknown" : msd.fileDescription.sourceFilePtrs.at(0)->name.c_str()));
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
pwiz/data/msdata/Serializer_MSn.cpp:44:11: warning: unused variable 'sizeChargeMSn' [-Wunused-const-variable]
   44 | const int sizeChargeMSn    = 12; // struct Charge{ int z; double mass; }
      |           ^~~~~~~~~~~~~
pwiz/data/msdata/Serializer_MSn.cpp:45:11: warning: unused variable 'sizePeakMSn' [-Wunused-const-variable]
   45 | const int sizePeakMSn      = 12; // struct Peak{ double mz; float intensity; }
      |           ^~~~~~~~~~~
14 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Reader.cpp -o pwiz/data/msdata/Reader.o
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Reader.cpp:26:
In file included from pwiz/data/msdata/Reader.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Serializer_mz5.cpp -o pwiz/data/msdata/Serializer_mz5.o
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/Serializer_mz5.cpp:28:
In file included from pwiz/data/msdata/Serializer_mz5.hpp:32:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Serializer_MGF.cpp -o pwiz/data/msdata/Serializer_MGF.o
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:25:
In file included from pwiz/data/msdata/Serializer_MGF.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:29:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:13:
In file included from ./boost/spirit/home/karma/char.hpp:13:
In file included from ./boost/spirit/home/karma/char/char.hpp:15:
In file included from ./boost/spirit/home/support/string_traits.hpp:16:
In file included from ./boost/spirit/home/support/container.hpp:21:
In file included from ./boost/variant.hpp:17:
In file included from ./boost/variant/variant.hpp:30:
In file included from ./boost/variant/detail/initializer.hpp:21:
In file included from ./boost/detail/reference_content.hpp:19:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor<boost::spirit::info::nil_>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   41 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>>' requested here
   25 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl<true, boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>, mpl_::bool_<true>, mpl_::bool_<true>, mpl_::bool_<true>>' requested here
   50 |     : aux::and_impl<
      |       ^
./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   42 |         : and_<
      |           ^
./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::mpl::aux::iter_fold_if_pred<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<l_end>>>, mpl_::na, boost::mpl::always<mpl_::bool_<false>>>' requested here
   85 |         aux::iter_fold_if_impl<
      |         ^
./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>::result_' requested here
  102 |           typename result_::state
      |                    ^
./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>' requested here
  190 |     typedef typename mpl::iter_fold_if<
      |                           ^
./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>' requested here
 1250 |     typedef typename detail::variant::find_fallback_type<
      |                                       ^
./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant<boost::spirit::info::nil_, std::string, boost::recursive_wrapper<boost::spirit::info>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::recursive_wrapper<std::list<boost::spirit::info>>>' requested here
   69 |         value_type value;
      |                    ^
In file included from pwiz/data/msdata/Serializer_MGF.cpp:29:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:21:
In file included from ./boost/spirit/home/karma/binary.hpp:13:
In file included from ./boost/spirit/home/karma/binary/binary.hpp:15:
In file included from ./boost/spirit/home/support/detail/endian.hpp:19:
In file included from ./boost/endian/arithmetic.hpp:30:
In file included from ./boost/endian/buffers.hpp:30:
In file included from ./boost/endian/detail/endian_store.hpp:12:
In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11:
./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
   29 |       BOOST_HAS_TRIVIAL_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN'
  193 | #     define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Serializer_mzXML.cpp -o pwiz/data/msdata/Serializer_mzXML.o
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:25:
In file included from pwiz/data/msdata/Serializer_mzXML.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Serializer_mzXML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumListBase.cpp -o pwiz/data/msdata/SpectrumListBase.o
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumListBase.cpp:25:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor<boost::range_detail::select_first<std::map<std::string, std::string>>>' requested here
   51 | template <class T> struct has_trivial_default_constructor : public has_trivial_constructor<T> {};
      |                                                                    ^
./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor<boost::range_detail::select_first<std::map<std::string, std::string>>>' requested here
   63 |           BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value)
      |                                                                    ^
./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_<boost::has_trivial_default_constructor<boost::range_detail::select_first<std::map<std::string, std::string>>>, boost::range_detail::select_first<std::map<std::string, std::string>>, boost::range_detail::default_constructible_unary_fn_wrapper<boost::range_detail::select_first<std::map<std::string, std::string>>, const std::string &>>' requested here
   71 |     typedef typename boost::mpl::if_<
      |                                  ^
./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen<boost::range_detail::select_first<std::map<std::string, std::string>>, const std::string &>' requested here
   31 |                 typename default_constructible_unary_fn_gen<
      |                          ^
./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen<boost::range_detail::select_first<std::map<std::string, std::string>>, std::__map_const_iterator<std::__tree_const_iterator<std::__value_type<std::string, std::string>, std::__tree_node<std::__value_type<std::string, std::string>, void *> *, long>>>' requested here
   42 |                 typename transform_iterator_gen<
      |                          ^
./boost/range/adaptor/map.hpp:65:22: note: in instantiation of template class 'boost::range_detail::transformed_range<boost::range_detail::select_first<std::map<std::string, std::string>>, const std::map<std::string, std::string>>' requested here
   65 |             : public transformed_range<
      |                      ^
pwiz/data/msdata/SpectrumListBase.cpp:62:38: note: in instantiation of template class 'boost::range_detail::select_first_range<std::map<std::string, std::string>>' requested here
   62 |         auto actualIdKeys = actualId | boost::adaptors::map_keys;
      |                                      ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_MGF.cpp -o pwiz/data/msdata/SpectrumList_MGF.o
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  243 |                                 bal::split(charges, value, bal::is_any_of(" "));
      |                                      ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/SpectrumList_MGF.cpp:243:38: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  243 |                                 bal::split(charges, value, bal::is_any_of(" "));
      |                                      ^
In file included from pwiz/data/msdata/SpectrumList_MGF.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MGF.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
./pwiz/utility/misc/BinaryData.hpp:247:20: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  247 |         return *(--end());
      |                    ^
./pwiz/utility/misc/BinaryData.hpp:365:9: note: in instantiation of member function 'pwiz::util::BinaryData<double>::back' requested here
  365 |         back() = value;
      |         ^
pwiz/data/msdata/SpectrumList_MGF.cpp:315:33: note: in instantiation of member function 'pwiz::util::BinaryData<double>::push_back' requested here
  315 |                         mzArray.push_back(mz);
      |                                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_mzML.cpp -o pwiz/data/msdata/SpectrumList_mzML.o
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_mzML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumList_mzML.cpp:31:
./boost/bind.hpp:36:1: warning: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use <boost/bind/bind.hpp> + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior. [-W#pragma-messages]
   36 | BOOST_PRAGMA_MESSAGE(
      | ^
./boost/config/pragma_message.hpp:24:34: note: expanded from macro 'BOOST_PRAGMA_MESSAGE'
   24 | # define BOOST_PRAGMA_MESSAGE(x) _Pragma(BOOST_STRINGIZE(message(x)))
      |                                  ^
<scratch space>:51:2: note: expanded from here
   51 |  message("The practice of declaring the Bind placeholders (_1, _2, ...) " "in the global namespace is deprecated. Please use " "<boost/bind/bind.hpp> + using namespace boost::placeholders, " "or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.")
      |  ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_MSn.cpp -o pwiz/data/msdata/SpectrumList_MSn.o
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/msdata/SpectrumList_MSn.cpp:641:12: warning: variable 'lineCount' set but not used [-Wunused-but-set-variable]
  641 |     size_t lineCount = 0;
      |            ^
In file included from pwiz/data/msdata/SpectrumList_MSn.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_MSn.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
./pwiz/utility/misc/BinaryData.hpp:247:20: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  247 |         return *(--end());
      |                    ^
./pwiz/utility/misc/BinaryData.hpp:365:9: note: in instantiation of member function 'pwiz::util::BinaryData<double>::back' requested here
  365 |         back() = value;
      |         ^
pwiz/data/msdata/SpectrumList_MSn.cpp:404:25: note: in instantiation of member function 'pwiz::util::BinaryData<double>::push_back' requested here
  404 |                 mzArray.push_back(mz);
      |                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_mz5.cpp -o pwiz/data/msdata/SpectrumList_mz5.o
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumList_mz5.cpp:28:
In file included from pwiz/data/msdata/SpectrumList_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/ReferenceRead_mz5.hpp:31:
In file included from pwiz/data/msdata/mz5/Connection_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/Configuration_mz5.hpp:28:
In file included from pwiz/data/msdata/mz5/../MSDataFile.hpp:30:
In file included from pwiz/data/msdata/mz5/../Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/BinaryDataEncoder.cpp -o pwiz/data/msdata/BinaryDataEncoder.o
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:38:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:26:
In file included from pwiz/data/msdata/BinaryDataEncoder.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/data/msdata/BinaryDataEncoder.cpp:459:54: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  459 |     copy(floatBuffer, floatBuffer+floatCount, result.begin());
      |                                                      ^
pwiz/data/msdata/BinaryDataEncoder.cpp:571:17: note: in instantiation of function template specialization 'pwiz::msdata::copyBuffer<double, float>' requested here
  571 |                 copyBuffer<T, T32>(byteBuffer, byteCount, result);
      |                 ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/data/msdata/BinaryDataEncoder.cpp:26:
In file included from pwiz/data/msdata/BinaryDataEncoder.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, long long>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/data/msdata/BinaryDataEncoder.cpp:459:54: note: in instantiation of member class 'pwiz::util::BinaryData<long long>::iterator' requested here
  459 |     copy(floatBuffer, floatBuffer+floatCount, result.begin());
      |                                                      ^
pwiz/data/msdata/BinaryDataEncoder.cpp:651:9: note: in instantiation of function template specialization 'pwiz::msdata::copyBuffer<long long, int>' requested here
  651 |         copyBuffer<T, T32>(byteBuffer, byteCount, result);
      |         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, long long>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Diff.cpp -o pwiz/data/msdata/Diff.o
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Diff.cpp:26:
In file included from pwiz/data/msdata/Diff.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Diff.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Diff.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/MSData.cpp -o pwiz/data/msdata/MSData.o
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/MSData.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/MSData.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/data/msdata/MSData.cpp:893:36: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  893 |     bd_mz->data.insert(bd_mz->data.end(), mzArray.begin(), mzArray.end());
      |                                    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'iterator<std::random_access_iterator_tag, const double>' is deprecated [-Wdeprecated-declarations]
   54 |     class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
      |                                                      ^
pwiz/data/msdata/MSData.cpp:893:51: note: in instantiation of member class 'pwiz::util::BinaryData<double>::const_iterator' requested here
  893 |     bd_mz->data.insert(bd_mz->data.end(), mzArray.begin(), mzArray.end());
      |                                                   ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, const double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<const char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  508 |     boost::split(pairs, id, boost::is_any_of(" \t\n\r"));
      |            ^
In file included from pwiz/data/msdata/MSData.cpp:25:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<const char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/MSData.cpp:508:12: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  508 |     boost::split(pairs, id, boost::is_any_of(" \t\n\r"));
      |            ^
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/References.cpp -o pwiz/data/msdata/References.o
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/References.cpp:25:
In file included from pwiz/data/msdata/References.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/References.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/References.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_mzXML.cpp -o pwiz/data/msdata/SpectrumList_mzXML.o
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  163 |                 boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(","));
      |                                   ^
In file included from pwiz/data/msdata/SpectrumList_mzXML.cpp:25:
In file included from pwiz/data/msdata/SpectrumList_mzXML.hpp:29:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/msdata/SpectrumList_mzXML.cpp:163:35: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  163 |                 boost::algorithm::split(strCharges, possibleCharges, boost::is_any_of(","));
      |                                   ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/IO.cpp -o pwiz/data/msdata/IO.o
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/IO.cpp:26:
In file included from pwiz/data/msdata/IO.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/IO.cpp:29:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/IO.cpp:29:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/msdata/IO.cpp:2132:35: warning: '&&' within '||' [-Wlogical-op-parentheses]
 2132 |             else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
      |                      ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~                ~~
pwiz/data/msdata/IO.cpp:2132:35: note: place parentheses around the '&&' expression to silence this warning
 2132 |             else if (version == 1 && name == "acquisitionList" /* mzML 1.0 */ || name == "scanList")
      |                                   ^
      |                      (                                        )
pwiz/data/msdata/IO.cpp:2836:31: warning: '&&' within '||' [-Wlogical-op-parentheses]
 2836 |         else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
      |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~                ~~
pwiz/data/msdata/IO.cpp:2836:31: note: place parentheses around the '&&' expression to silence this warning
 2836 |         else if (version == 1 && name == "acquisitionSettings" /* mzML 1.0 */ ||
      |                               ^
      |                  (                                            )
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumList_BTDX.cpp -o pwiz/data/msdata/SpectrumList_BTDX.o
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:31:
In file included from ./boost/range/adaptor/map.hpp:14:
In file included from ./boost/range/adaptor/transformed.hpp:15:
In file included from ./boost/range/detail/default_constructible_unary_fn.hpp:13:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumList_BTDX.cpp:26:
In file included from pwiz/data/msdata/SpectrumList_BTDX.hpp:30:
In file included from pwiz/data/msdata/SpectrumListBase.hpp:28:
In file included from ./pwiz/data/msdata/MSData.hpp:29:
./pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
./pwiz/utility/misc/BinaryData.hpp:247:20: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  247 |         return *(--end());
      |                    ^
./pwiz/utility/misc/BinaryData.hpp:365:9: note: in instantiation of member function 'pwiz::util::BinaryData<double>::back' requested here
  365 |         back() = value;
      |         ^
pwiz/data/msdata/SpectrumList_BTDX.cpp:138:26: note: in instantiation of member function 'pwiz::util::BinaryData<double>::push_back' requested here
  138 |                 mzArray_.push_back(mzValue);
      |                          ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
pwiz/data/msdata/SpectrumList_BTDX.cpp:279:19: warning: private field 'msd_' is not used [-Wunused-private-field]
  279 |     const MSData& msd_;
      |                   ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumInfo.cpp -o pwiz/data/msdata/SpectrumInfo.o
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:27:
In file included from pwiz/data/msdata/SpectrumInfo.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumInfo.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/LegacyAdapter.cpp -o pwiz/data/msdata/LegacyAdapter.o
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:27:
In file included from pwiz/data/msdata/LegacyAdapter.hpp:30:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:29:
In file included from ./boost/lambda/lambda.hpp:14:
In file included from ./boost/lambda/core.hpp:48:
In file included from ./boost/lambda/detail/lambda_traits.hpp:18:
In file included from ./boost/type_traits/object_traits.hpp:17:
./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
   29 |       BOOST_HAS_TRIVIAL_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN'
  193 | #     define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:29:
In file included from ./boost/lambda/lambda.hpp:14:
In file included from ./boost/lambda/core.hpp:48:
In file included from ./boost/lambda/detail/lambda_traits.hpp:18:
In file included from ./boost/type_traits/object_traits.hpp:21:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:29:
In file included from ./boost/lambda/lambda.hpp:14:
In file included from ./boost/lambda/core.hpp:48:
In file included from ./boost/lambda/detail/lambda_traits.hpp:18:
In file included from ./boost/type_traits/object_traits.hpp:22:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/LegacyAdapter.cpp:29:
In file included from ./boost/lambda/lambda.hpp:14:
In file included from ./boost/lambda/core.hpp:48:
In file included from ./boost/lambda/detail/lambda_traits.hpp:18:
In file included from ./boost/type_traits/object_traits.hpp:23:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumIterator.cpp -o pwiz/data/msdata/SpectrumIterator.o
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:26:
In file included from pwiz/data/msdata/SpectrumIterator.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumIterator.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/msdata/SpectrumIterator.cpp:125:20: warning: '&&' within '||' [-Wlogical-op-parentheses]
  125 |     return (done() && &that.spectrumList_==&pastEndMarker_ ||
      |             ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
pwiz/data/msdata/SpectrumIterator.cpp:125:20: note: place parentheses around the '&&' expression to silence this warning
  125 |     return (done() && &that.spectrumList_==&pastEndMarker_ ||
      |                    ^
      |             (                                             )
pwiz/data/msdata/SpectrumIterator.cpp:126:45: warning: '&&' within '||' [-Wlogical-op-parentheses]
  125 |     return (done() && &that.spectrumList_==&pastEndMarker_ ||
      |                                                            ~~
  126 |             &spectrumList_==&pastEndMarker_ && that.done() ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
pwiz/data/msdata/SpectrumIterator.cpp:126:45: note: place parentheses around the '&&' expression to silence this warning
  126 |             &spectrumList_==&pastEndMarker_ && that.done() ||
      |                                             ^
      |             (                                             )
pwiz/data/msdata/SpectrumIterator.cpp:127:49: warning: '&&' within '||' [-Wlogical-op-parentheses]
  126 |             &spectrumList_==&pastEndMarker_ && that.done() ||
      |                                                            ~~
  127 |             &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pwiz/data/msdata/SpectrumIterator.cpp:127:49: note: place parentheses around the '&&' expression to silence this warning
  127 |             &spectrumList_==&that.spectrumList_ && currentIndex_==that.currentIndex_);
      |                                                 ^                                   
      |             (                                                                       )
pwiz/data/msdata/SpectrumIterator.cpp:141:34: warning: '&&' within '||' [-Wlogical-op-parentheses]
  141 |     return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() ||
      |            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
pwiz/data/msdata/SpectrumIterator.cpp:141:34: note: place parentheses around the '&&' expression to silence this warning
  141 |     return !scanNumbers_.empty() && currentScanNumber_==scanNumbers_.end() ||
      |                                  ^
      |            (                                                              )
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/MSDataFile.cpp -o pwiz/data/msdata/MSDataFile.o
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:29:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:30:
In file included from pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:30:
In file included from pwiz/data/msdata/Reader.hpp:29:
In file included from ./pwiz/utility/chemistry/MzMobilityWindow.hpp:22:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/MSDataFile.cpp:26:
In file included from pwiz/data/msdata/MSDataFile.hpp:30:
In file included from pwiz/data/msdata/Reader.hpp:29:
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: warning: '&&' within '||' [-Wlogical-op-parentheses]
   39 |         return !mobilityBounds ||
      |                                ~~
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
./pwiz/utility/chemistry/MzMobilityWindow.hpp:40:59: note: place parentheses around the '&&' expression to silence this warning
   40 |                mobilityBounds.get().first < mobilityValue && mobilityValue < mobilityBounds.get().second;
      |                                                           ^                                             
      |                (                                                                                        )
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/MSNumpress.cpp -o pwiz/data/msdata/MSNumpress.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumListCache.cpp -o pwiz/data/msdata/SpectrumListCache.o
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:27:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:28:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:29:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:30:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:30:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   39 |     explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor<T>::value) : t(t_) {}          \
      |                                                      ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:29:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor<unsigned int>' requested here
   69 | template <class T> struct has_nothrow_default_constructor : public has_nothrow_constructor<T>{};
      |                                                                    ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   40 |     D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor<T>::value) : t() {}                             \
      |                                  ^
In file included from pwiz/data/msdata/SpectrumListCache.cpp:25:
In file included from pwiz/data/msdata/SpectrumListCache.hpp:28:
In file included from pwiz/data/msdata/MemoryMRUCache.hpp:27:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:28:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   42 |     D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign<T>::value) {t = rhs.t; return *this;} \
      |                                                         ^
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/Index_mzML.cpp -o pwiz/data/msdata/Index_mzML.o
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/Index_mzML.cpp:24:
In file included from pwiz/data/msdata/Index_mzML.hpp:28:
In file included from pwiz/data/msdata/MSData.hpp:30:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/Index_mzML.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/Index_mzML.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/msdata/SpectrumWorkerThreads.cpp -o pwiz/data/msdata/SpectrumWorkerThreads.o
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:30:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:30:
In file included from ./pwiz/utility/misc/mru_list.hpp:25:
In file included from ./boost/multi_index_container.hpp:36:
In file included from ./boost/multi_index/detail/base_type.hpp:21:
In file included from ./boost/multi_index/detail/index_base.hpp:33:
In file included from ./boost/multi_index/detail/index_loader.hpp:22:
In file included from ./boost/serialization/nvp.hpp:35:
In file included from ./boost/serialization/split_free.hpp:22:
In file included from ./boost/serialization/serialization.hpp:14:
In file included from ./boost/serialization/strong_typedef.hpp:30:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_copy_constructor<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:39:54: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   39 |     explicit D(const T& t_) BOOST_NOEXCEPT_IF(boost::has_nothrow_copy_constructor<T>::value) : t(t_) {}          \
      |                                                      ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/type_traits/has_nothrow_constructor.hpp:69:68: note: in instantiation of template class 'boost::has_nothrow_constructor<unsigned int>' requested here
   69 | template <class T> struct has_nothrow_default_constructor : public has_nothrow_constructor<T>{};
      |                                                                    ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_default_constructor<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:40:34: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   40 |     D() BOOST_NOEXCEPT_IF(boost::has_nothrow_default_constructor<T>::value) : t() {}                             \
      |                                  ^
In file included from pwiz/data/msdata/SpectrumWorkerThreads.cpp:24:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
./boost/serialization/serialization.hpp:52:1: note: in instantiation of template class 'boost::has_nothrow_assign<unsigned int>' requested here
   52 | BOOST_STRONG_TYPEDEF(unsigned int, version_type)
      | ^
./boost/serialization/strong_typedef.hpp:42:57: note: expanded from macro 'BOOST_STRONG_TYPEDEF'
   42 |     D& operator=(const D& rhs) BOOST_NOEXCEPT_IF(boost::has_nothrow_assign<T>::value) {t = rhs.t; return *this;} \
      |                                                         ^
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/IdentDataFile.cpp -o pwiz/data/identdata/IdentDataFile.o
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:25:
In file included from pwiz/data/identdata/IdentDataFile.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:30:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/IdentDataFile.cpp:30:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/IdentData.cpp -o pwiz/data/identdata/IdentData.o
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/IdentData.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/identdata/IdentData.cpp:30:
./pwiz/data/common/Unimod.hpp:69:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   69 | BOOST_BITFIELD_DOMAIN_OPERATORS(Site)
      | ^
./boost_aux/boost/enum/macros.hpp:234:5: note: expanded from macro 'BOOST_BITFIELD_DOMAIN_OPERATORS'
  234 |     BOOST_ENUM_DOMAIN_OPERATORS(_name) \
      |     ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/identdata/IdentData.cpp:30:
./pwiz/data/common/Unimod.hpp:78:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   78 | BOOST_ENUM_DOMAIN_OPERATORS(Position)
      | ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/identdata/IdentData.cpp:30:
./pwiz/data/common/Unimod.hpp:97:1: warning: all paths through this function will call itself [-Winfinite-recursion]
   97 | BOOST_BITFIELD_DOMAIN_OPERATORS(Classification)
      | ^
./boost_aux/boost/enum/macros.hpp:234:5: note: expanded from macro 'BOOST_BITFIELD_DOMAIN_OPERATORS'
  234 |     BOOST_ENUM_DOMAIN_OPERATORS(_name) \
      |     ^
./boost_aux/boost/enum/macros.hpp:226:73: note: expanded from macro 'BOOST_ENUM_DOMAIN_OPERATORS'
  226 |     inline bool operator== (const _name::domain& lhs, const _name& rhs) {return rhs == lhs;} \
      |                                                                         ^
In file included from pwiz/data/identdata/IdentData.cpp:31:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/DefaultReaderList.cpp -o pwiz/data/identdata/DefaultReaderList.o
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/identdata/DefaultReaderList.cpp:29:
In file included from pwiz/data/identdata/DefaultReaderList.hpp:29:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/Reader.cpp -o pwiz/data/identdata/Reader.o
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/Reader.cpp:26:
In file included from pwiz/data/identdata/Reader.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/Reader.cpp:27:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/Reader.cpp:27:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/Serializer_protXML.cpp -o pwiz/data/identdata/Serializer_protXML.o
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:28:
In file included from pwiz/data/identdata/Serializer_protXML.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/Serializer_protXML.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/identdata/Serializer_protXML.cpp:97:9: warning: field 'strict' will be initialized after field 'nPeptides' [-Wreorder-ctor]
   96 |         ilr(iterationListenerRegistry),
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         nPeptides(0)
   97 |         strict(strict),
      |         ^~~~~~~~~~~~~~
      |         SourceFilesPtr(returnValueSourceFiles)
   98 |         nPeptides(0),
      |         ~~~~~~~~~~~~
      |         ilr(iterationListenerRegistry)
   99 |         SourceFilesPtr(returnValueSourceFiles)
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |         strict(strict)
pwiz/data/identdata/Serializer_protXML.cpp:476:10: warning: private field 'readSpectrumQueries' is not used [-Wunused-private-field]
  476 |     bool readSpectrumQueries;
      |          ^
pwiz/data/identdata/Serializer_protXML.cpp:477:38: warning: private field 'ilr' is not used [-Wunused-private-field]
  477 |     const IterationListenerRegistry* ilr;
      |                                      ^
12 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/Serializer_pepXML.cpp -o pwiz/data/identdata/Serializer_pepXML.o
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_name>' requested here
   51 | template <class T> struct has_trivial_default_constructor : public has_trivial_constructor<T> {};
      |                                                                    ^
./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_name>' requested here
   63 |           BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value)
      |                                                                    ^
./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_<boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_name>, pwiz::identdata::(anonymous namespace)::EnzymePtr_name, boost::range_detail::default_constructible_unary_fn_wrapper<pwiz::identdata::(anonymous namespace)::EnzymePtr_name, std::string>>' requested here
   71 |     typedef typename boost::mpl::if_<
      |                                  ^
./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_name, std::string>' requested here
   31 |                 typename default_constructible_unary_fn_gen<
      |                          ^
./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_name, std::__wrap_iter<const boost::shared_ptr<pwiz::identdata::Enzyme> *>>' requested here
   42 |                 typename transform_iterator_gen<
      |                          ^
pwiz/data/identdata/Serializer_pepXML.cpp:415:55: note: in instantiation of template class 'boost::range_detail::transformed_range<pwiz::identdata::(anonymous namespace)::EnzymePtr_name, const std::vector<boost::shared_ptr<pwiz::identdata::Enzyme>>>' requested here
  415 |     string enzymeName = bal::join(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_name()), " + ");
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity>' requested here
   51 | template <class T> struct has_trivial_default_constructor : public has_trivial_constructor<T> {};
      |                                                                    ^
./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity>' requested here
   63 |           BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value)
      |                                                                    ^
./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_<boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity>, pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, boost::range_detail::default_constructible_unary_fn_wrapper<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, int>>' requested here
   71 |     typedef typename boost::mpl::if_<
      |                                  ^
./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, int>' requested here
   31 |                 typename default_constructible_unary_fn_gen<
      |                          ^
./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, std::__wrap_iter<const boost::shared_ptr<pwiz::identdata::Enzyme> *>>' requested here
   42 |                 typename transform_iterator_gen<
      |                          ^
pwiz/data/identdata/Serializer_pepXML.cpp:418:73: note: in instantiation of template class 'boost::range_detail::transformed_range<pwiz::identdata::(anonymous namespace)::EnzymePtr_specificity, const std::vector<boost::shared_ptr<pwiz::identdata::Enzyme>>>' requested here
  418 |     int minSpecificity = *boost::range::min_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_specificity()));
      |                                                                         ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages>' requested here
   51 | template <class T> struct has_trivial_default_constructor : public has_trivial_constructor<T> {};
      |                                                                    ^
./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages>' requested here
   63 |           BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value)
      |                                                                    ^
./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_<boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages>, pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, boost::range_detail::default_constructible_unary_fn_wrapper<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, int>>' requested here
   71 |     typedef typename boost::mpl::if_<
      |                                  ^
./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, int>' requested here
   31 |                 typename default_constructible_unary_fn_gen<
      |                          ^
./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, std::__wrap_iter<const boost::shared_ptr<pwiz::identdata::Enzyme> *>>' requested here
   42 |                 typename transform_iterator_gen<
      |                          ^
pwiz/data/identdata/Serializer_pepXML.cpp:504:81: note: in instantiation of template class 'boost::range_detail::transformed_range<pwiz::identdata::(anonymous namespace)::EnzymePtr_missedCleavages, const std::vector<boost::shared_ptr<pwiz::identdata::Enzyme>>>' requested here
  504 |         int maxMissedCleavages = *boost::range::max_element(sip.enzymes.enzymes | boost::adaptors::transformed(EnzymePtr_missedCleavages()));
      |                                                                                 ^
pwiz/data/identdata/Serializer_pepXML.cpp:561:104: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int]
  561 |                         default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa);
      |                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
pwiz/data/identdata/Serializer_pepXML.cpp:561:104: note: use array indexing to silence this warning
  561 |                         default: throw runtime_error("[write_search_summary] Unsupported AA residue: " + aa);
      |                                                                                                        ^   
      |                                                      &                                                 [   ]
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
./boost/type_traits/has_trivial_constructor.hpp:51:68: note: in instantiation of template class 'boost::has_trivial_constructor<pwiz::identdata::(anonymous namespace)::CVParam_name>' requested here
   51 | template <class T> struct has_trivial_default_constructor : public has_trivial_constructor<T> {};
      |                                                                    ^
./boost/mpl/if.hpp:63:68: note: in instantiation of template class 'boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::CVParam_name>' requested here
   63 |           BOOST_MPL_AUX_STATIC_CAST(bool, BOOST_MPL_AUX_VALUE_WKND(T1)::value)
      |                                                                    ^
./boost/range/detail/default_constructible_unary_fn.hpp:71:34: note: in instantiation of template class 'boost::mpl::if_<boost::has_trivial_default_constructor<pwiz::identdata::(anonymous namespace)::CVParam_name>, pwiz::identdata::(anonymous namespace)::CVParam_name, boost::range_detail::default_constructible_unary_fn_wrapper<pwiz::identdata::(anonymous namespace)::CVParam_name, std::string>>' requested here
   71 |     typedef typename boost::mpl::if_<
      |                                  ^
./boost/range/adaptor/transformed.hpp:31:26: note: in instantiation of template class 'boost::range_detail::default_constructible_unary_fn_gen<pwiz::identdata::(anonymous namespace)::CVParam_name, std::string>' requested here
   31 |                 typename default_constructible_unary_fn_gen<
      |                          ^
./boost/range/adaptor/transformed.hpp:42:26: note: in instantiation of template class 'boost::range_detail::transform_iterator_gen<pwiz::identdata::(anonymous namespace)::CVParam_name, std::__wrap_iter<pwiz::data::CVParam *>>' requested here
   42 |                 typename transform_iterator_gen<
      |                          ^
pwiz/data/identdata/Serializer_pepXML.cpp:586:65: note: in instantiation of template class 'boost::range_detail::transformed_range<pwiz::identdata::(anonymous namespace)::CVParam_name, std::vector<pwiz::data::CVParam>>' requested here
  586 |                     string description = bal::join(possibleMods | boost::adaptors::transformed(CVParam_name()), ", ");
      |                                                                 ^
pwiz/data/identdata/Serializer_pepXML.cpp:1546:5: warning: non-void function does not return a value in all control paths [-Wreturn-type]
 1546 |     }
      |     ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<const char *>, const char *, const char *>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<const char *>, const char *, const char *>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<const char *>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<const char *>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const char *const &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const char *const &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  113 |             bal::split(names, ast.softwareNames, bal::is_any_of(";"));
      |                  ^
In file included from pwiz/data/identdata/Serializer_pepXML.cpp:25:
In file included from pwiz/data/identdata/Serializer_pepXML.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<const char *>, const char *, const char *>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<const char *>, const char *, const char *>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<const char *>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<const char *>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, const char *const &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/identdata/Serializer_pepXML.cpp:113:18: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, const char *const &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  113 |             bal::split(names, ast.softwareNames, bal::is_any_of(";"));
      |                  ^
pwiz/data/identdata/Serializer_pepXML.cpp:995:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field]
  995 |     const CVTranslator& _cvTranslator;
      |                         ^
pwiz/data/identdata/Serializer_pepXML.cpp:1450:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field]
 1450 |     const CVTranslator& _cvTranslator;
      |                         ^
pwiz/data/identdata/Serializer_pepXML.cpp:1796:25: warning: private field '_cvTranslator' is not used [-Wunused-private-field]
 1796 |     const CVTranslator& _cvTranslator;
      |                         ^
pwiz/data/identdata/Serializer_pepXML.cpp:1970:38: warning: private field 'ilr' is not used [-Wunused-private-field]
 1970 |     const IterationListenerRegistry* ilr;
      |                                      ^
21 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/Serializer_mzid.cpp -o pwiz/data/identdata/Serializer_mzid.o
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:26:
In file included from pwiz/data/identdata/Serializer_mzid.hpp:28:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/Serializer_mzid.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/IO.cpp -o pwiz/data/identdata/IO.o
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/IO.cpp:26:
In file included from pwiz/data/identdata/IO.hpp:27:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/IO.cpp:30:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/IO.cpp:30:
In file included from ./pwiz/utility/misc/Filesystem.hpp:34:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/References.cpp -o pwiz/data/identdata/References.o
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/References.cpp:25:
In file included from pwiz/data/identdata/References.hpp:29:
In file included from pwiz/data/identdata/IdentData.hpp:31:
In file included from ./pwiz/data/common/ParamTypes.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/References.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/References.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/data/identdata/References.cpp:149:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
  149 |             BOOST_FOREACH(OrganizationPtr& org, static_cast<Person*>(c.get())->affiliations)
      |             ^
./boost/foreach.hpp:1107:108: note: expanded from macro 'BOOST_FOREACH'
 1107 |     if (boost::foreach_detail_::auto_any_t BOOST_FOREACH_ID(_foreach_col) = BOOST_FOREACH_CONTAIN(COL)) {} else   \
      |                                                                                                            ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/identdata/MascotReader.cpp -o pwiz/data/identdata/MascotReader.o
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/identdata/MascotReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/identdata/MascotReader.cpp:26:
In file included from pwiz/data/identdata/MascotReader.hpp:28:
In file included from ./pwiz/data/identdata/Reader.hpp:28:
In file included from ./pwiz/data/identdata/IdentData.hpp:30:
In file included from ./pwiz/data/proteome/Digestion.hpp:32:
In file included from ./pwiz/data/proteome/Peptide.hpp:183:
./pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/identdata/MascotReader.cpp:26:
pwiz/data/identdata/MascotReader.hpp:62:11: warning: private field 'pimpl' is not used [-Wunused-private-field]
   62 |     Impl* pimpl;
      |           ^
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/proteome/Modification.cpp -o pwiz/data/proteome/Modification.o
In file included from pwiz/data/proteome/Modification.cpp:27:
pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/proteome/Modification.cpp:30:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/proteome/Digestion.cpp -o pwiz/data/proteome/Digestion.o
In file included from pwiz/data/proteome/Digestion.cpp:27:
In file included from pwiz/data/proteome/Digestion.hpp:32:
In file included from pwiz/data/proteome/Peptide.hpp:183:
pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   98 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<std::__wrap_iter<const char *>>::find_iterator<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  104 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find<std::vector<boost::iterator_range<std::__wrap_iter<const char *>>>, const std::string &, boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   71 |             return ::boost::algorithm::iter_find(
      |                                        ^
pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all<std::vector<boost::iterator_range<std::__wrap_iter<const char *>>>, const std::string &, std::string>' requested here
  468 |         bal::find_all(instances, sequence_, peptide.sequence());
      |              ^
In file included from pwiz/data/proteome/Digestion.cpp:32:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::assign_to<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<const char *>>, std::__wrap_iter<const char *>, std::__wrap_iter<const char *>>::function2<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:98:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<const char *>>::find_iterator_base<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   98 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:104:21: note: in instantiation of function template specialization 'boost::algorithm::find_iterator<std::__wrap_iter<const char *>>::find_iterator<boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
  104 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:71:40: note: in instantiation of function template specialization 'boost::algorithm::iter_find<std::vector<boost::iterator_range<std::__wrap_iter<const char *>>>, const std::string &, boost::algorithm::detail::first_finderF<std::__wrap_iter<const char *>, boost::algorithm::is_equal>>' requested here
   71 |             return ::boost::algorithm::iter_find(
      |                                        ^
pwiz/data/proteome/Digestion.cpp:468:14: note: in instantiation of function template specialization 'boost::algorithm::find_all<std::vector<boost::iterator_range<std::__wrap_iter<const char *>>>, const std::string &, std::string>' requested here
  468 |         bal::find_all(instances, sequence_, peptide.sequence());
      |              ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/proteome/Peptide.cpp -o pwiz/data/proteome/Peptide.o
In file included from pwiz/data/proteome/Peptide.cpp:26:
In file included from pwiz/data/proteome/Peptide.hpp:183:
pwiz/data/proteome/Modification.hpp:189:18: warning: 'pwiz::proteome::ModificationMap::swap' hides overloaded virtual function [-Woverloaded-virtual]
  189 |     virtual void swap(ModificationMap&);
      |                  ^
./pwiz/utility/misc/virtual_map.hpp:218:18: note: hidden overloaded virtual function 'pwiz::util::virtual_map<int, pwiz::proteome::ModificationList>::swap' declared here: type mismatch at 1st parameter ('virtual_map<int, ModificationList, key_compare, allocator_type> &' (aka 'virtual_map<int, pwiz::proteome::ModificationList, std::less<int>, std::allocator<std::pair<const int, pwiz::proteome::ModificationList>>> &') vs 'ModificationMap &')
  218 |     virtual void swap(virtual_map<keyT, valueT, key_compare, allocator_type>& x)
      |                  ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
./boost/type_traits/has_trivial_copy.hpp:57:65: note: in instantiation of template class 'boost::has_trivial_copy<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   57 | template <class T> struct has_trivial_copy_constructor : public has_trivial_copy<T>{};
      |                                                                 ^
./boost/function/function_template.hpp:945:20: note: in instantiation of template class 'boost::has_trivial_copy_constructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  945 |         if (boost::has_trivial_copy_constructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  337 |             split(tokens, massStr, bal::is_any_of(","));
      |             ^
In file included from pwiz/data/proteome/Peptide.cpp:31:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
./boost/function/function_template.hpp:946:20: note: in instantiation of template class 'boost::has_trivial_destructor<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  946 |             boost::has_trivial_destructor<Functor>::value &&
      |                    ^
./boost/function/function_template.hpp:720:13: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::assign_to<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  720 |       this->assign_to(f);
      |             ^
./boost/algorithm/string/detail/find_iterator.hpp:51:21: note: in instantiation of function template specialization 'boost::function2<boost::iterator_range<std::__wrap_iter<char *>>, std::__wrap_iter<char *>, std::__wrap_iter<char *>>::function2<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
   51 |                     m_Finder(Finder) {}
      |                     ^
./boost/algorithm/string/find_iterator.hpp:261:17: note: in instantiation of function template specialization 'boost::algorithm::detail::find_iterator_base<std::__wrap_iter<char *>>::find_iterator_base<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  261 |                 detail::find_iterator_base<IteratorT>(Finder,0),
      |                 ^
./boost/algorithm/string/iter_find.hpp:178:21: note: in instantiation of function template specialization 'boost::algorithm::split_iterator<std::__wrap_iter<char *>>::split_iterator<boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  178 |                     find_iterator_type( ::boost::begin(lit_input), InputEnd, Finder ),
      |                     ^
./boost/algorithm/string/split.hpp:158:40: note: in instantiation of function template specialization 'boost::algorithm::iter_split<std::vector<std::string>, std::string &, boost::algorithm::detail::token_finderF<boost::algorithm::detail::is_any_ofF<char>>>' requested here
  158 |             return ::boost::algorithm::iter_split(
      |                                        ^
pwiz/data/proteome/Peptide.cpp:337:13: note: in instantiation of function template specialization 'boost::algorithm::split<std::vector<std::string>, std::string &, boost::algorithm::detail::is_any_ofF<char>>' requested here
  337 |             split(tokens, massStr, bal::is_any_of(","));
      |             ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/data/proteome/AminoAcid.cpp -o pwiz/data/proteome/AminoAcid.o
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/data/proteome/AminoAcid.cpp:27:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/minimxml/XMLWriter.cpp -o pwiz/utility/minimxml/XMLWriter.o
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:25:
In file included from pwiz/utility/minimxml/XMLWriter.hpp:29:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:29:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:13:
In file included from ./boost/spirit/home/karma/char.hpp:13:
In file included from ./boost/spirit/home/karma/char/char.hpp:15:
In file included from ./boost/spirit/home/support/string_traits.hpp:16:
In file included from ./boost/spirit/home/support/container.hpp:21:
In file included from ./boost/variant.hpp:17:
In file included from ./boost/variant/variant.hpp:30:
In file included from ./boost/variant/detail/initializer.hpp:21:
In file included from ./boost/detail/reference_content.hpp:19:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor<boost::spirit::info::nil_>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   41 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>>' requested here
   25 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl<true, boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>, mpl_::bool_<true>, mpl_::bool_<true>, mpl_::bool_<true>>' requested here
   50 |     : aux::and_impl<
      |       ^
./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   42 |         : and_<
      |           ^
./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::mpl::aux::iter_fold_if_pred<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<l_end>>>, mpl_::na, boost::mpl::always<mpl_::bool_<false>>>' requested here
   85 |         aux::iter_fold_if_impl<
      |         ^
./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>::result_' requested here
  102 |           typename result_::state
      |                    ^
./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>' requested here
  190 |     typedef typename mpl::iter_fold_if<
      |                           ^
./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>' requested here
 1250 |     typedef typename detail::variant::find_fallback_type<
      |                                       ^
./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant<boost::spirit::info::nil_, std::string, boost::recursive_wrapper<boost::spirit::info>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::recursive_wrapper<std::list<boost::spirit::info>>>' requested here
   69 |         value_type value;
      |                    ^
In file included from pwiz/utility/minimxml/XMLWriter.cpp:29:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:21:
In file included from ./boost/spirit/home/karma/binary.hpp:13:
In file included from ./boost/spirit/home/karma/binary/binary.hpp:15:
In file included from ./boost/spirit/home/support/detail/endian.hpp:19:
In file included from ./boost/endian/arithmetic.hpp:30:
In file included from ./boost/endian/buffers.hpp:30:
In file included from ./boost/endian/detail/endian_store.hpp:12:
In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11:
./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
   29 |       BOOST_HAS_TRIVIAL_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN'
  193 | #     define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/minimxml/SAXParser.cpp -o pwiz/utility/minimxml/SAXParser.o
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:28:
In file included from pwiz/utility/minimxml/SAXParser.hpp:31:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/minimxml/SAXParser.cpp:29:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/utility/minimxml/SAXParser.cpp:38:14: warning: unused variable 'comment_begin' [-Wunused-const-variable]
   38 | const string comment_begin("!--"), comment_end("--");
      |              ^~~~~~~~~~~~~
pwiz/utility/minimxml/SAXParser.cpp:38:36: warning: unused variable 'comment_end' [-Wunused-const-variable]
   38 | const string comment_begin("!--"), comment_end("--");
      |                                    ^~~~~~~~~~~
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/chemistry/Chemistry.cpp -o pwiz/utility/chemistry/Chemistry.o
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/chemistry/Chemistry.cpp:28:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/chemistry/ChemistryData.cpp -o pwiz/utility/chemistry/ChemistryData.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/chemistry/MZTolerance.cpp -o pwiz/utility/chemistry/MZTolerance.o
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/chemistry/MZTolerance.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/IntegerSet.cpp -o pwiz/utility/misc/IntegerSet.o
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/IntegerSet.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/utility/misc/IntegerSet.cpp:307:63: warning: '&&' within '||' [-Wlogical-op-parentheses]
  307 |     return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ~~
pwiz/utility/misc/IntegerSet.cpp:307:63: note: place parentheses around the '&&' expression to silence this warning
  307 |     return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
      |                                                               ^
      |             (                                                                       )
pwiz/utility/misc/IntegerSet.cpp:308:23: warning: '&&' within '||' [-Wlogical-op-parentheses]
  307 |     return (it_!=end_ && that.it_!=that.end_ && it_==that.it_ && value_==that.value_ ||
      |                                                                                      ~~
  308 |             it_==end_ && that.it_==nothing_.end());
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
pwiz/utility/misc/IntegerSet.cpp:308:23: note: place parentheses around the '&&' expression to silence this warning
  308 |             it_==end_ && that.it_==nothing_.end());
      |                       ^                          
      |             (                                    )
10 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/Base64.cpp -o pwiz/utility/misc/Base64.o
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/Base64.cpp:26:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/BinaryData.cpp -o pwiz/utility/misc/BinaryData.o
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/BinaryData.cpp:25:
In file included from pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
pwiz/utility/misc/BinaryData.cpp:303:9: warning: unknown pragma ignored [-Wunknown-pragmas]
  303 | #pragma managed(push, off)
      |         ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'iterator<std::random_access_iterator_tag, const double>' is deprecated [-Wdeprecated-declarations]
   54 |     class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
      |                                                      ^
pwiz/utility/misc/BinaryData.cpp:471:30: note: in instantiation of member class 'pwiz::util::BinaryData<double>::const_iterator' requested here
  471 | PWIZ_API_DECL template class BinaryData<double>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, const double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, double>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/utility/misc/BinaryData.cpp:299:14: note: in instantiation of member class 'pwiz::util::BinaryData<double>::iterator' requested here
  299 |     iterator begin_, end_;
      |              ^
pwiz/utility/misc/BinaryData.cpp:463:21: note: in instantiation of member class 'pwiz::util::BinaryData<double>::Impl' requested here
  463 |     binaryData._impl->makeIterator(*this, begin);
      |                     ^
pwiz/utility/misc/BinaryData.cpp:471:30: note: in instantiation of member function 'pwiz::util::BinaryData<double>::const_iterator::const_iterator' requested here
  471 | PWIZ_API_DECL template class BinaryData<double>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, double>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'iterator<std::random_access_iterator_tag, const float>' is deprecated [-Wdeprecated-declarations]
   54 |     class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
      |                                                      ^
pwiz/utility/misc/BinaryData.cpp:472:30: note: in instantiation of member class 'pwiz::util::BinaryData<float>::const_iterator' requested here
  472 | PWIZ_API_DECL template class BinaryData<float>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, const float>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, float>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/utility/misc/BinaryData.cpp:299:14: note: in instantiation of member class 'pwiz::util::BinaryData<float>::iterator' requested here
  299 |     iterator begin_, end_;
      |              ^
pwiz/utility/misc/BinaryData.cpp:463:21: note: in instantiation of member class 'pwiz::util::BinaryData<float>::Impl' requested here
  463 |     binaryData._impl->makeIterator(*this, begin);
      |                     ^
pwiz/utility/misc/BinaryData.cpp:472:30: note: in instantiation of member function 'pwiz::util::BinaryData<float>::const_iterator::const_iterator' requested here
  472 | PWIZ_API_DECL template class BinaryData<float>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, float>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:54:54: warning: 'iterator<std::random_access_iterator_tag, const long long>' is deprecated [-Wdeprecated-declarations]
   54 |     class PWIZ_API_DECL const_iterator : public std::iterator<std::random_access_iterator_tag, const T>
      |                                                      ^
pwiz/utility/misc/BinaryData.cpp:473:30: note: in instantiation of member class 'pwiz::util::BinaryData<long long>::const_iterator' requested here
  473 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, const long long>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
In file included from pwiz/utility/misc/BinaryData.cpp:24:
pwiz/utility/misc/BinaryData.hpp:88:48: warning: 'iterator<std::random_access_iterator_tag, long long>' is deprecated [-Wdeprecated-declarations]
   88 |     class PWIZ_API_DECL iterator : public std::iterator<std::random_access_iterator_tag, T>
      |                                                ^
pwiz/utility/misc/BinaryData.cpp:299:14: note: in instantiation of member class 'pwiz::util::BinaryData<long long>::iterator' requested here
  299 |     iterator begin_, end_;
      |              ^
pwiz/utility/misc/BinaryData.cpp:463:21: note: in instantiation of member class 'pwiz::util::BinaryData<long long>::Impl' requested here
  463 |     binaryData._impl->makeIterator(*this, begin);
      |                     ^
pwiz/utility/misc/BinaryData.cpp:473:30: note: in instantiation of member function 'pwiz::util::BinaryData<long long>::const_iterator::const_iterator' requested here
  473 | PWIZ_API_DECL template class BinaryData<std::int64_t>;
      |                              ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__iterator/iterator.h:23:29: note: 'iterator<std::random_access_iterator_tag, long long>' has been explicitly marked deprecated here
   23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX17 iterator {
      |                             ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:737:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
  737 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
      |                                         ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/c++/v1/__config:710:49: note: expanded from macro '_LIBCPP_DEPRECATED'
  710 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))
      |                                                 ^
pwiz/utility/misc/BinaryData.cpp:475:9: warning: unknown pragma ignored [-Wunknown-pragmas]
  475 | #pragma managed(pop)
      |         ^
14 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/IterationListener.cpp -o pwiz/utility/misc/IterationListener.o
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/IterationListener.cpp:26:
In file included from pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/MSIHandler.cpp -o pwiz/utility/misc/MSIHandler.o
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/MSIHandler.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/Filesystem.cpp -o pwiz/utility/misc/Filesystem.o
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:31:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:31:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/Filesystem.cpp:58:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:13:
In file included from ./boost/spirit/home/karma/char.hpp:13:
In file included from ./boost/spirit/home/karma/char/char.hpp:15:
In file included from ./boost/spirit/home/support/string_traits.hpp:16:
In file included from ./boost/spirit/home/support/container.hpp:21:
In file included from ./boost/variant.hpp:17:
In file included from ./boost/variant/variant.hpp:30:
In file included from ./boost/variant/detail/initializer.hpp:21:
In file included from ./boost/detail/reference_content.hpp:19:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/Filesystem.cpp:26:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor<boost::spirit::info::nil_>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   41 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>>' requested here
   25 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl<true, boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>, mpl_::bool_<true>, mpl_::bool_<true>, mpl_::bool_<true>>' requested here
   50 |     : aux::and_impl<
      |       ^
./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   42 |         : and_<
      |           ^
./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::mpl::aux::iter_fold_if_pred<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<l_end>>>, mpl_::na, boost::mpl::always<mpl_::bool_<false>>>' requested here
   85 |         aux::iter_fold_if_impl<
      |         ^
./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>::result_' requested here
  102 |           typename result_::state
      |                    ^
./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>' requested here
  190 |     typedef typename mpl::iter_fold_if<
      |                           ^
./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>' requested here
 1250 |     typedef typename detail::variant::find_fallback_type<
      |                                       ^
./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant<boost::spirit::info::nil_, std::string, boost::recursive_wrapper<boost::spirit::info>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::recursive_wrapper<std::list<boost::spirit::info>>>' requested here
   69 |         value_type value;
      |                    ^
In file included from pwiz/utility/misc/Filesystem.cpp:58:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:21:
In file included from ./boost/spirit/home/karma/binary.hpp:13:
In file included from ./boost/spirit/home/karma/binary/binary.hpp:15:
In file included from ./boost/spirit/home/support/detail/endian.hpp:19:
In file included from ./boost/endian/arithmetic.hpp:30:
In file included from ./boost/endian/buffers.hpp:30:
In file included from ./boost/endian/detail/endian_store.hpp:12:
In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11:
./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
   29 |       BOOST_HAS_TRIVIAL_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN'
  193 | #     define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/TabReader.cpp -o pwiz/utility/misc/TabReader.o
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/TabReader.cpp:25:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
pwiz/utility/misc/TabReader.cpp:44:22: warning: assigning field to itself [-Wself-assign-field]
   44 |         comment_char = comment_char;
      |                      ^
9 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/random_access_compressed_ifstream.cpp -o pwiz/utility/misc/random_access_compressed_ifstream.o
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/random_access_compressed_ifstream.cpp:76:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/SHA1.cpp -o pwiz/utility/misc/SHA1.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/SHA1Calculator.cpp -o pwiz/utility/misc/SHA1Calculator.o
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:13:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:29:
In file included from ./pwiz/utility/misc/Environment.hpp:24:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:14:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/SHA1Calculator.cpp:33:
In file included from ./pwiz/utility/misc/Std.hpp:31:
In file included from ./pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/sha1calc.cpp -o pwiz/utility/misc/sha1calc.o
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:29:
In file included from pwiz/utility/misc/DateTime.hpp:25:
In file included from ./boost/date_time/local_time/local_time.hpp:11:
In file included from ./boost/date_time/posix_time/posix_time.hpp:24:
In file included from ./boost/date_time/posix_time/time_formatters.hpp:12:
In file included from ./boost/date_time/gregorian/gregorian.hpp:31:
In file included from ./boost/date_time/gregorian/gregorian_io.hpp:16:
In file included from ./boost/date_time/date_facet.hpp:25:
In file included from ./boost/date_time/date_generator_parser.hpp:20:
In file included from ./boost/date_time/format_date_parser.hpp:14:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:29:
In file included from pwiz/utility/misc/DateTime.hpp:25:
In file included from ./boost/date_time/local_time/local_time.hpp:11:
In file included from ./boost/date_time/posix_time/posix_time.hpp:24:
In file included from ./boost/date_time/posix_time/time_formatters.hpp:12:
In file included from ./boost/date_time/gregorian/gregorian.hpp:31:
In file included from ./boost/date_time/gregorian/gregorian_io.hpp:16:
In file included from ./boost/date_time/date_facet.hpp:25:
In file included from ./boost/date_time/date_generator_parser.hpp:20:
In file included from ./boost/date_time/format_date_parser.hpp:14:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:29:
In file included from pwiz/utility/misc/DateTime.hpp:25:
In file included from ./boost/date_time/local_time/local_time.hpp:11:
In file included from ./boost/date_time/posix_time/posix_time.hpp:24:
In file included from ./boost/date_time/posix_time/time_formatters.hpp:12:
In file included from ./boost/date_time/gregorian/gregorian.hpp:31:
In file included from ./boost/date_time/gregorian/gregorian_io.hpp:16:
In file included from ./boost/date_time/date_facet.hpp:25:
In file included from ./boost/date_time/date_generator_parser.hpp:20:
In file included from ./boost/date_time/format_date_parser.hpp:14:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:29:
In file included from pwiz/utility/misc/DateTime.hpp:25:
In file included from ./boost/date_time/local_time/local_time.hpp:19:
In file included from ./boost/date_time/local_time/tz_database.hpp:14:
In file included from ./boost/date_time/tz_db_base.hpp:24:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:29:
In file included from pwiz/utility/misc/DateTime.hpp:25:
In file included from ./boost/date_time/local_time/local_time.hpp:19:
In file included from ./boost/date_time/local_time/tz_database.hpp:14:
In file included from ./boost/date_time/tz_db_base.hpp:24:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:30:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:30:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/utility/misc/sha1calc.cpp:25:
In file included from pwiz/utility/misc/unit.hpp:30:
In file included from pwiz/utility/misc/Filesystem.hpp:34:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
8 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pwiz/utility/misc/String.cpp -o pwiz/utility/misc/String.o
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:31:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:31:
In file included from ./boost/algorithm/string.hpp:23:
In file included from ./boost/algorithm/string/split.hpp:16:
In file included from ./boost/algorithm/string/iter_find.hpp:27:
In file included from ./boost/algorithm/string/find_iterator.hpp:24:
In file included from ./boost/algorithm/string/detail/find_iterator.hpp:18:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:29:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:33:
In file included from ./pwiz/utility/misc/optimized_lexical_cast.hpp:36:
In file included from ./pwiz/utility/misc/Singleton.hpp:26:
In file included from ./boost_aux/boost/utility/singleton.hpp:18:
In file included from ./boost_aux/boost/utility/detail/member_dereference.hpp:32:
In file included from ./boost/function_types/function_arity.hpp:12:
In file included from ./boost/blank.hpp:26:
In file included from ./boost/type_traits/is_stateless.hpp:12:
./boost/type_traits/has_trivial_constructor.hpp:41:69: warning: builtin __has_trivial_constructor is deprecated; use __is_trivially_constructible instead [-Wdeprecated-builtins]
   41 |    : public integral_constant <bool, ((::boost::is_pod<T>::value || BOOST_HAS_TRIVIAL_CONSTRUCTOR(T)) BOOST_TT_TRIVIAL_CONSTRUCT_FIX)>{};
      |                                                                     ^
./boost/type_traits/intrinsics.hpp:187:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_CONSTRUCTOR'
  187 | #     define BOOST_HAS_TRIVIAL_CONSTRUCTOR(T) __has_trivial_constructor(T)
      |                                               ^
In file included from pwiz/utility/misc/String.cpp:24:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:13:
In file included from ./boost/spirit/home/karma/char.hpp:13:
In file included from ./boost/spirit/home/karma/char/char.hpp:15:
In file included from ./boost/spirit/home/support/string_traits.hpp:16:
In file included from ./boost/spirit/home/support/container.hpp:21:
In file included from ./boost/variant.hpp:17:
In file included from ./boost/variant/variant.hpp:30:
In file included from ./boost/variant/detail/initializer.hpp:21:
In file included from ./boost/detail/reference_content.hpp:19:
./boost/type_traits/has_nothrow_copy.hpp:36:89: warning: builtin __has_nothrow_copy is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   36 | template <class T> struct has_nothrow_copy_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_COPY(T)>{};
      |                                                                                         ^
./boost/type_traits/intrinsics.hpp:202:41: note: expanded from macro 'BOOST_HAS_NOTHROW_COPY'
  202 | #     define BOOST_HAS_NOTHROW_COPY(T) (__has_nothrow_copy(T) && !is_volatile<T>::value && !is_reference<T>::value && is_copy_constructible<T>::value)
      |                                         ^
In file included from pwiz/utility/misc/String.cpp:21:
In file included from pwiz/utility/misc/String.hpp:32:
In file included from ./boost/format.hpp:38:
In file included from ./boost/format/internals.hpp:21:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::has_nothrow_constructor<boost::spirit::info::nil_>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/not.hpp:41:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   41 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/nested_type_wknd.hpp:27:7: note: in instantiation of template class 'boost::mpl::not_<boost::has_nothrow_constructor<boost::spirit::info::nil_>>' requested here
   27 |     : T::type
      |       ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:25:11: note: in instantiation of template class 'boost::mpl::aux::nested_type_wknd<boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>>' requested here
   25 |           BOOST_MPL_AUX_NESTED_TYPE_WKND(T1)::value
      |           ^
./boost/mpl/aux_/nested_type_wknd.hpp:38:24: note: expanded from macro 'BOOST_MPL_AUX_NESTED_TYPE_WKND'
   38 |     ::boost::mpl::aux::nested_type_wknd<T> \
      |                        ^
./boost/mpl/aux_/preprocessed/gcc/and.hpp:50:7: note: in instantiation of template class 'boost::mpl::aux::and_impl<true, boost::mpl::apply1<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>>, mpl_::bool_<true>, mpl_::bool_<true>, mpl_::bool_<true>>' requested here
   50 |     : aux::and_impl<
      |       ^
./boost/mpl/iter_fold_if.hpp:42:11: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
   42 |         : and_<
      |           ^
./boost/mpl/iter_fold_if.hpp:85:9: note: in instantiation of template class 'boost::mpl::aux::iter_fold_if_impl<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::mpl::aux::iter_fold_if_pred<boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>, boost::mpl::l_iter<l_end>>>, mpl_::na, boost::mpl::always<mpl_::bool_<false>>>' requested here
   85 |         aux::iter_fold_if_impl<
      |         ^
./boost/mpl/iter_fold_if.hpp:102:20: note: in instantiation of member class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>::result_' requested here
  102 |           typename result_::state
      |                    ^
./boost/variant/variant.hpp:190:27: note: in instantiation of template class 'boost::mpl::iter_fold_if<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>, mpl_::int_<0>, boost::mpl::protect<boost::mpl::next<na>>, boost::mpl::protect<boost::detail::variant::find_fallback_type_pred>>' requested here
  190 |     typedef typename mpl::iter_fold_if<
      |                           ^
./boost/variant/variant.hpp:1250:39: note: in instantiation of template class 'boost::detail::variant::find_fallback_type<boost::mpl::l_item<mpl_::long_<5>, boost::spirit::info::nil_, boost::mpl::l_item<mpl_::long_<4>, std::string, boost::mpl::l_item<mpl_::long_<3>, boost::recursive_wrapper<boost::spirit::info>, boost::mpl::l_item<mpl_::long_<2>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::mpl::l_item<mpl_::long_<1>, boost::recursive_wrapper<std::list<boost::spirit::info>>, boost::mpl::l_end>>>>>>' requested here
 1250 |     typedef typename detail::variant::find_fallback_type<
      |                                       ^
./boost/spirit/home/support/info.hpp:69:20: note: in instantiation of template class 'boost::variant<boost::spirit::info::nil_, std::string, boost::recursive_wrapper<boost::spirit::info>, boost::recursive_wrapper<std::pair<boost::spirit::info, boost::spirit::info>>, boost::recursive_wrapper<std::list<boost::spirit::info>>>' requested here
   69 |         value_type value;
      |                    ^
In file included from pwiz/utility/misc/String.cpp:24:
In file included from ./boost/spirit/include/karma.hpp:16:
In file included from ./boost/spirit/home/karma.hpp:21:
In file included from ./boost/spirit/home/karma/binary.hpp:13:
In file included from ./boost/spirit/home/karma/binary/binary.hpp:15:
In file included from ./boost/spirit/home/support/detail/endian.hpp:19:
In file included from ./boost/endian/arithmetic.hpp:30:
In file included from ./boost/endian/buffers.hpp:30:
In file included from ./boost/endian/detail/endian_store.hpp:12:
In file included from ./boost/endian/detail/is_trivially_copyable.hpp:11:
./boost/type_traits/has_trivial_assign.hpp:29:7: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins]
   29 |       BOOST_HAS_TRIVIAL_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:193:43: note: expanded from macro 'BOOST_HAS_TRIVIAL_ASSIGN'
  193 | #     define BOOST_HAS_TRIVIAL_ASSIGN(T) (__has_trivial_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
11 warnings generated.
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/thread/src/pthread/once.cpp -o boost/libs/thread/src/pthread/once.o
clang++ -arch arm64 -std=gnu++20 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I./boost_aux/ -I./boost/ -I. -D_LARGEFILE_SOURCE -DHAVE_PWIZ_MZML_LIB -D_NODEBUG    -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c boost/libs/thread/src/pthread/thread.cpp -o boost/libs/thread/src/pthread/thread.o
In file included from boost/libs/thread/src/pthread/thread.cpp:19:
In file included from ./boost/thread/future.hpp:51:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:38:
./boost/type_traits/has_nothrow_constructor.hpp:27:84: warning: builtin __has_nothrow_constructor is deprecated; use __is_nothrow_constructible instead [-Wdeprecated-builtins]
   27 | template <class T> struct has_nothrow_constructor : public integral_constant<bool, BOOST_HAS_NOTHROW_CONSTRUCTOR(T)>{};
      |                                                                                    ^
./boost/type_traits/intrinsics.hpp:199:48: note: expanded from macro 'BOOST_HAS_NOTHROW_CONSTRUCTOR'
  199 | #     define BOOST_HAS_NOTHROW_CONSTRUCTOR(T) (__has_nothrow_constructor(T) && is_default_constructible<T>::value)
      |                                                ^
In file included from boost/libs/thread/src/pthread/thread.cpp:19:
In file included from ./boost/thread/future.hpp:51:
In file included from ./boost/optional.hpp:15:
In file included from ./boost/optional/optional.hpp:47:
In file included from ./boost/type_traits/is_nothrow_move_assignable.hpp:16:
./boost/type_traits/has_nothrow_assign.hpp:65:7: warning: builtin __has_nothrow_assign is deprecated; use __is_nothrow_assignable instead [-Wdeprecated-builtins]
   65 |       BOOST_HAS_NOTHROW_ASSIGN(T)
      |       ^
./boost/type_traits/intrinsics.hpp:205:43: note: expanded from macro 'BOOST_HAS_NOTHROW_ASSIGN'
  205 | #     define BOOST_HAS_NOTHROW_ASSIGN(T) (__has_nothrow_assign(T) && !is_volatile<T>::value && is_assignable<T&, const T&>::value)
      |                                           ^
In file included from boost/libs/thread/src/pthread/thread.cpp:19:
In file included from ./boost/thread/future.hpp:65:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:22:
./boost/type_traits/has_trivial_copy.hpp:34:4: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins]
   34 |    BOOST_HAS_TRIVIAL_COPY(T) BOOST_TT_TRIVIAL_CONSTRUCT_FIX
      |    ^
./boost/type_traits/intrinsics.hpp:190:41: note: expanded from macro 'BOOST_HAS_TRIVIAL_COPY'
  190 | #     define BOOST_HAS_TRIVIAL_COPY(T) (__has_trivial_copy(T) && !is_reference<T>::value)
      |                                         ^
In file included from boost/libs/thread/src/pthread/thread.cpp:19:
In file included from ./boost/thread/future.hpp:65:
In file included from ./boost/function.hpp:30:
In file included from ./boost/function/detail/prologue.hpp:17:
In file included from ./boost/function/function_base.hpp:23:
./boost/type_traits/has_trivial_destructor.hpp:30:86: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins]
   30 | template <typename T> struct has_trivial_destructor : public integral_constant<bool, BOOST_HAS_TRIVIAL_DESTRUCTOR(T)>{};
      |                                                                                      ^
./boost/type_traits/intrinsics.hpp:196:47: note: expanded from macro 'BOOST_HAS_TRIVIAL_DESTRUCTOR'
  196 | #     define BOOST_HAS_TRIVIAL_DESTRUCTOR(T) (__has_trivial_destructor(T)  && is_destructible<T>::value)
      |                                               ^
In file included from boost/libs/thread/src/pthread/thread.cpp:38:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:285:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  285 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from boost/libs/thread/src/pthread/thread.cpp:38:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:297:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  297 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
In file included from boost/libs/thread/src/pthread/thread.cpp:38:
In file included from ./boost/lexical_cast.hpp:32:
In file included from ./boost/lexical_cast/try_lexical_convert.hpp:44:
In file included from ./boost/lexical_cast/detail/converter_lexical.hpp:54:
./boost/lexical_cast/detail/converter_lexical_streams.hpp:310:21: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
  310 |                     sprintf(begin,
      |                     ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/_stdio.h:278:1: note: 'sprintf' has been explicitly marked deprecated here
  278 | __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
      | ^
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/sys/cdefs.h:227:48: note: expanded from macro '__deprecated_msg'
  227 |         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
      |                                                       ^
7 warnings generated.
clang++ -arch arm64 -std=gnu++20 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mzR.so RcppPwiz.o RcppPwizModule.o RcppIdent.o RcppIdentModule.o ./boost/libs/system/src/error_code.o ./boost/libs/regex/src/posix_api.o ./boost/libs/regex/src/regex_debug.o ./boost/libs/regex/src/regex.o ./boost/libs/regex/src/wide_posix_api.o ./boost/libs/regex/src/static_mutex.o ./boost/libs/iostreams/src/zlib.o ./boost/libs/iostreams/src/file_descriptor.o ./boost/libs/filesystem/src/operations.o ./boost/libs/filesystem/src/directory.o ./boost/libs/filesystem/src/exception.o ./boost/libs/filesystem/src/path.o ./boost/libs/filesystem/src/unique_path.o ./boost/libs/filesystem/src/utf8_codecvt_facet.o ./boost/libs/chrono/src/chrono.o ./boost/libs/chrono/src/process_cpu_clocks.o ./boost/libs/chrono/src/thread_clock.o ./pwiz/data/msdata/Version.o ./pwiz/data/identdata/Version.o ./pwiz/data/common/MemoryIndex.o ./pwiz/data/common/CVTranslator.o ./pwiz/data/common/cv.o ./pwiz/data/common/ParamTypes.o ./pwiz/data/common/BinaryIndexStream.o ./pwiz/data/common/diff_std.o ./pwiz/data/common/Unimod.o ./pwiz/data/msdata/mz5/Configuration_mz5.o ./pwiz/data/msdata/mz5/Connection_mz5.o ./pwiz/data/msdata/mz5/Datastructures_mz5.o ./pwiz/data/msdata/mz5/ReferenceRead_mz5.o ./pwiz/data/msdata/mz5/ReferenceWrite_mz5.o ./pwiz/data/msdata/mz5/Translator_mz5.o ./pwiz/data/msdata/DefaultReaderList.o ./pwiz/data/msdata/ChromatogramList_mzML.o ./pwiz/data/msdata/ChromatogramList_mz5.o ./pwiz/data/msdata/examples.o ./pwiz/data/msdata/Serializer_mzML.o ./pwiz/data/msdata/Serializer_MSn.o ./pwiz/data/msdata/Reader.o ./pwiz/data/msdata/Serializer_mz5.o ./pwiz/data/msdata/Serializer_MGF.o ./pwiz/data/msdata/Serializer_mzXML.o ./pwiz/data/msdata/SpectrumListBase.o ./pwiz/data/msdata/SpectrumList_MGF.o ./pwiz/data/msdata/SpectrumList_mzML.o ./pwiz/data/msdata/SpectrumList_MSn.o ./pwiz/data/msdata/SpectrumList_mz5.o ./pwiz/data/msdata/BinaryDataEncoder.o ./pwiz/data/msdata/Diff.o ./pwiz/data/msdata/MSData.o ./pwiz/data/msdata/References.o ./pwiz/data/msdata/SpectrumList_mzXML.o ./pwiz/data/msdata/IO.o ./pwiz/data/msdata/SpectrumList_BTDX.o ./pwiz/data/msdata/SpectrumInfo.o ./pwiz/data/msdata/LegacyAdapter.o ./pwiz/data/msdata/SpectrumIterator.o ./pwiz/data/msdata/MSDataFile.o ./pwiz/data/msdata/MSNumpress.o ./pwiz/data/msdata/SpectrumListCache.o ./pwiz/data/msdata/Index_mzML.o ./pwiz/data/msdata/SpectrumWorkerThreads.o ./pwiz/data/identdata/IdentDataFile.o ./pwiz/data/identdata/IdentData.o ./pwiz/data/identdata/DefaultReaderList.o ./pwiz/data/identdata/Reader.o ./pwiz/data/identdata/Serializer_protXML.o ./pwiz/data/identdata/Serializer_pepXML.o ./pwiz/data/identdata/Serializer_mzid.o ./pwiz/data/identdata/IO.o ./pwiz/data/identdata/References.o ./pwiz/data/identdata/MascotReader.o ./pwiz/data/proteome/Modification.o ./pwiz/data/proteome/Digestion.o ./pwiz/data/proteome/Peptide.o ./pwiz/data/proteome/AminoAcid.o ./pwiz/utility/minimxml/XMLWriter.o ./pwiz/utility/minimxml/SAXParser.o ./pwiz/utility/chemistry/Chemistry.o ./pwiz/utility/chemistry/ChemistryData.o ./pwiz/utility/chemistry/MZTolerance.o ./pwiz/utility/misc/IntegerSet.o ./pwiz/utility/misc/Base64.o ./pwiz/utility/misc/BinaryData.o ./pwiz/utility/misc/IterationListener.o ./pwiz/utility/misc/MSIHandler.o ./pwiz/utility/misc/Filesystem.o ./pwiz/utility/misc/TabReader.o ./pwiz/utility/misc/random_access_compressed_ifstream.o ./pwiz/utility/misc/SHA1.o ./pwiz/utility/misc/SHA1Calculator.o ./pwiz/utility/misc/sha1calc.o ./pwiz/utility/misc/String.o ./RcppExports.o ./boost/libs/thread/src/pthread/once.o ./boost/libs/thread/src/pthread/thread.o -lpthread /Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/lib/libhdf5_cpp.a /Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/lib/libhdf5.a -L/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rhdf5lib/lib -lsz -lm -ldl -lcurl -lssl -lcrypto -F/Library/Frameworks/R.framework/.. -framework R
installing to /Users/biocbuild/bbs-3.23-bioc/meat/mzR.buildbin-libdir/00LOCK-mzR/00new/mzR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mzR)


>>>>>>> 
>>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR mzR.buildbin-libdir/mzR/libs/mzR.so
>>>>>>> 

>>>>>>> Paths before fix:
mzR.buildbin-libdir/mzR/libs/mzR.so:
	mzR.so (compatibility version 0.0.0, current version 0.0.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)
	/usr/lib/libcurl.4.dylib (compatibility version 7.0.0, current version 9.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 2000.67.0)

>>>>>>> Fix with install_name_tool:
install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgcc_s.1.1.dylib" "mzR.buildbin-libdir/mzR/libs/mzR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libgfortran.5.dylib" "mzR.buildbin-libdir/mzR/libs/mzR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libquadmath.0.dylib" "mzR.buildbin-libdir/mzR/libs/mzR.so"

>>>>>>> Paths after fix:
mzR.buildbin-libdir/mzR/libs/mzR.so:
	mzR.so (compatibility version 0.0.0, current version 0.0.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1356.0.0)
	/usr/lib/libcurl.4.dylib (compatibility version 7.0.0, current version 9.0.0)
	/Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libR.dylib (compatibility version 4.6.0, current version 4.6.0)
	/usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 2000.67.0)