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This page was generated on 2026-02-19 11:32 -0500 (Thu, 19 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" 4868
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1257/2354HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metaseqR2 1.23.0  (landing page)
Panagiotis Moulos
Snapshot Date: 2026-02-18 13:40 -0500 (Wed, 18 Feb 2026)
git_url: https://git.bioconductor.org/packages/metaseqR2
git_branch: devel
git_last_commit: 25b9df1
git_last_commit_date: 2025-10-29 10:59:18 -0500 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for metaseqR2 in R Universe.

BUILD results for metaseqR2 on nebbiolo1

To the developers/maintainers of the metaseqR2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: metaseqR2
Version: 1.23.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2
StartedAt: 2026-02-18 18:54:00 -0500 (Wed, 18 Feb 2026)
EndedAt: 2026-02-18 18:58:12 -0500 (Wed, 18 Feb 2026)
EllapsedTime: 251.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data metaseqR2
###
##############################################################################
##############################################################################


* checking for file ‘metaseqR2/DESCRIPTION’ ... OK
* preparing ‘metaseqR2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘metaseqr2-annotation.Rmd’ using rmarkdown
--- finished re-building ‘metaseqr2-annotation.Rmd’

--- re-building ‘metaseqr2-statistics.Rmd’ using rmarkdown
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_correlogram.png (deflated 1%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_heatmap.png (deflated 9%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_pairs.png (deflated 1%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/filtered_genes.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/mds.png (deflated 44%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/boxplot_normalized.png (deflated 17%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/boxplot_raw.png (deflated 17%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/gcbias_normalized.png (deflated 13%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/gcbias_raw.png (deflated 12%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/lengthbias_normalized.png (deflated 10%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/lengthbias_raw.png (deflated 10%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meanvar_normalized.png (deflated 6%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meanvar_raw.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 6%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 7%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_correlogram.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_heatmap.pdf (deflated 26%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/correlation_pairs.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/filtered_genes.pdf (deflated 7%)
  adding: tmp/RtmpQHaTE0/test1/plots/qc/mds.pdf (deflated 12%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/boxplot_normalized.pdf (deflated 12%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/boxplot_raw.pdf (deflated 12%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/gcbias_normalized.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/gcbias_raw.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/lengthbias_normalized.pdf (deflated 1%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/lengthbias_raw.pdf (deflated 1%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meanvar_normalized.pdf (deflated 44%)
  adding: tmp/RtmpQHaTE0/test1/plots/normalization/meanvar_raw.pdf (deflated 39%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 9%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%)
  adding: tmp/RtmpQHaTE0/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%)
trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js'
Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB)
==================================================
downloaded 12 KB

trying URL 'https://code.highcharts.com/highcharts.js'
downloaded 273 KB

trying URL 'https://code.highcharts.com/highcharts-more.js'
downloaded 97 KB

trying URL 'https://code.highcharts.com/modules/exporting.js'
downloaded 26 KB

trying URL 'https://code.highcharts.com/modules/offline-exporting.js'
downloaded 5899 bytes

trying URL 'https://code.highcharts.com/modules/export-data.js'
downloaded 12 KB

trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js'
Content type 'text/javascript; charset=utf-8' length 56670 bytes (55 KB)
==================================================
downloaded 55 KB

  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_correlogram.png (deflated 1%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_heatmap.png (deflated 9%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_pairs.png (deflated 1%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/filtered_genes.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/mds.png (deflated 44%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/boxplot_normalized.png (deflated 12%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/boxplot_raw.png (deflated 17%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/gcbias_normalized.png (deflated 20%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/gcbias_raw.png (deflated 12%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/lengthbias_normalized.png (deflated 11%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/lengthbias_raw.png (deflated 10%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 3%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meanvar_normalized.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meanvar_raw.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 6%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 13%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_correlogram.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_heatmap.pdf (deflated 26%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/correlation_pairs.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/filtered_genes.pdf (deflated 7%)
  adding: tmp/RtmpQHaTE0/test2/plots/qc/mds.pdf (deflated 12%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/boxplot_normalized.pdf (deflated 8%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/boxplot_raw.pdf (deflated 12%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/gcbias_normalized.pdf (deflated 6%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/gcbias_raw.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/lengthbias_normalized.pdf (deflated 4%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/lengthbias_raw.pdf (deflated 1%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 33%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 33%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meanvar_normalized.pdf (deflated 40%)
  adding: tmp/RtmpQHaTE0/test2/plots/normalization/meanvar_raw.pdf (deflated 39%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%)
  adding: tmp/RtmpQHaTE0/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%)
trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js'
Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB)
==================================================
downloaded 12 KB

trying URL 'https://code.highcharts.com/highcharts.js'
downloaded 273 KB

trying URL 'https://code.highcharts.com/highcharts-more.js'
downloaded 97 KB

trying URL 'https://code.highcharts.com/modules/exporting.js'
downloaded 26 KB

trying URL 'https://code.highcharts.com/modules/offline-exporting.js'
downloaded 5899 bytes

trying URL 'https://code.highcharts.com/modules/export-data.js'

Quitting from metaseqr2-statistics.Rmd:299-338 [example-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://code.highcharts.com/modules/export-data.js'
---
Backtrace:
    ▆
 1. └─metaseqR2::metaseqr2(...)
 2.   └─metaseqR2:::.downloadJsLibs(PROJECT_PATH, reportDb)
 3.     └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'metaseqr2-statistics.Rmd' failed with diagnostics:
cannot open URL 'https://code.highcharts.com/modules/export-data.js'
--- failed re-building ‘metaseqr2-statistics.Rmd’

SUMMARY: processing the following file failed:
  ‘metaseqr2-statistics.Rmd’

Error: Vignette re-building failed.
Execution halted