Multiple platform build/check report for BioC 3.23 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4869
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4576
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.27.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz

StartedAt: 2025-12-04 02:10:05 -0500 (Thu, 04 Dec 2025)

EndedAt: 2025-12-04 02:11:36 -0500 (Thu, 04 Dec 2025)

EllapsedTime: 91.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-858.975
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-562.967
ELB improved by 296.008

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-503.378
ELB improved by 59.5895

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.328
ELB improved by 36.0494

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.34
ELB improved by 15.9883

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.097
ELB improved by 7.24326

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.44
ELB improved by 4.65646

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.426
ELB improved by 4.01394

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.479
ELB improved by 3.94794

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.425
ELB improved by 4.05373

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.386
ELB improved by 4.03918

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.702
ELB improved by 3.68409

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.715
ELB improved by 2.98661

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.536
ELB improved by 2.17858

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.043
ELB improved by 1.49306

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.027
ELB improved by 1.01677

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.303
ELB improved by 0.723332

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.751
ELB improved by 0.55213

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.297
ELB improved by 0.454239

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.895
ELB improved by 0.401506

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.514
ELB improved by 0.381278

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.125
ELB improved by 0.388869

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.709
ELB improved by 0.416103

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.276
ELB improved by 0.433529

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.879
ELB improved by 0.396601

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.573
ELB improved by 0.305817

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.359
ELB improved by 0.214354

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.205
ELB improved by 0.15391

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.085
ELB improved by 0.119876

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.985
ELB improved by 0.100177

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.897
ELB improved by 0.0873485

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.82
ELB improved by 0.0779369

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.749
ELB improved by 0.0704431

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.685
ELB improved by 0.0641859

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.626
ELB improved by 0.0588213

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.572
ELB improved by 0.054151

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.522
ELB improved by 0.0500457

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.475
ELB improved by 0.046413

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.432
ELB improved by 0.0431821

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.392
ELB improved by 0.0402967

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.354
ELB improved by 0.0377107

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.319
ELB improved by 0.0353855

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.286
ELB improved by 0.0332888

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.254
ELB improved by 0.031393

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.225
ELB improved by 0.0296744

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.196
ELB improved by 0.0281127

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.17
ELB improved by 0.0266902

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.144
ELB improved by 0.0253918

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.12
ELB improved by 0.0242039

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.097
ELB improved by 0.0231149

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.075
ELB improved by 0.0221146

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.054
ELB improved by 0.0211939

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.033
ELB improved by 0.0203448

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.014
ELB improved by 0.0195602

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.995
ELB improved by 0.0188339

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.977
ELB improved by 0.0181604

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.959
ELB improved by 0.0175347

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.942
ELB improved by 0.0169524

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.926
ELB improved by 0.0164095

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.91
ELB improved by 0.0159027

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.895
ELB improved by 0.0154287

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.88
ELB improved by 0.0149849

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.865
ELB improved by 0.0145687

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.851
ELB improved by 0.014178

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.837
ELB improved by 0.0138108

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.824
ELB improved by 0.0134654

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.81
ELB improved by 0.0131402

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.798
ELB improved by 0.0128339

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.785
ELB improved by 0.0125453

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.773
ELB improved by 0.0122733

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.761
ELB improved by 0.0120171

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.749
ELB improved by 0.0117758

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.737
ELB improved by 0.0115487

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.726
ELB improved by 0.0113352

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.715
ELB improved by 0.0111349

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.704
ELB improved by 0.0109472

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.693
ELB improved by 0.0107718

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.683
ELB improved by 0.0106085

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.672
ELB improved by 0.0104569

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.662
ELB improved by 0.0103169

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.652
ELB improved by 0.0101883

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.642
ELB improved by 0.010071

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.632
ELB improved by 0.00996506

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-849.621
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-555.898
ELB improved by 293.723

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-499.931
ELB improved by 55.9671

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.115
ELB improved by 28.8165

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.918
ELB improved by 11.1964

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.755
ELB improved by 5.16318

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.219
ELB improved by 3.53583

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.093
ELB improved by 3.12648

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.848
ELB improved by 3.24494

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.229
ELB improved by 3.61897

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.194
ELB improved by 4.0346

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.965
ELB improved by 4.22933

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.959
ELB improved by 4.00572

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.613
ELB improved by 3.34631

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.162
ELB improved by 2.45054

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.484
ELB improved by 1.67797

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.303
ELB improved by 1.18101

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.405
ELB improved by 0.898591

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.666
ELB improved by 0.73844

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.026
ELB improved by 0.640735

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.451
ELB improved by 0.574194

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.928
ELB improved by 0.523601

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.446
ELB improved by 0.481851

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416
ELB improved by 0.445804

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.586
ELB improved by 0.414191

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.199
ELB improved by 0.38656

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.837
ELB improved by 0.362763

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.494
ELB improved by 0.34274

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.167
ELB improved by 0.326442

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.854
ELB improved by 0.313845

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.549
ELB improved by 0.304975

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.249
ELB improved by 0.299947

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.95
ELB improved by 0.298952

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.647
ELB improved by 0.30217

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.338
ELB improved by 0.30953

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.018
ELB improved by 0.320405

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.684
ELB improved by 0.333517

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.337
ELB improved by 0.347377

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.976
ELB improved by 0.360939

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.602
ELB improved by 0.373729

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.217
ELB improved by 0.385469

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.821
ELB improved by 0.395707

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.418
ELB improved by 0.403279

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.012
ELB improved by 0.405301

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.616
ELB improved by 0.396723

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.243
ELB improved by 0.372656

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.91
ELB improved by 0.333123

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.625
ELB improved by 0.28473

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.389
ELB improved by 0.236382

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.194
ELB improved by 0.194148

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.035
ELB improved by 0.159821

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.902
ELB improved by 0.132278

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.793
ELB improved by 0.10946

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.703
ELB improved by 0.0898528

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.63
ELB improved by 0.0729838

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.571
ELB improved by 0.0589778

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.523
ELB improved by 0.0478947

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.484
ELB improved by 0.0394654

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.451
ELB improved by 0.0332027

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.422
ELB improved by 0.0285901

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.397
ELB improved by 0.0251925

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.374
ELB improved by 0.0226861

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.353
ELB improved by 0.0208488

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.334
ELB improved by 0.01954

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.315
ELB improved by 0.0186823

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.297
ELB improved by 0.0182486

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.278
ELB improved by 0.0182546

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.26
ELB improved by 0.0187524

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.24
ELB improved by 0.0198197

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.218
ELB improved by 0.0215318

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.194
ELB improved by 0.0238972

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.168
ELB improved by 0.0267469

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.138
ELB improved by 0.0296145

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.106
ELB improved by 0.0317441

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.074
ELB improved by 0.0323777

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.043
ELB improved by 0.0312127

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.014
ELB improved by 0.0285878

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.989
ELB improved by 0.0251865

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.967
ELB improved by 0.0216199

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.949
ELB improved by 0.0182618

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.934
ELB improved by 0.015295

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.921
ELB improved by 0.0127905

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.91
ELB improved by 0.0107514

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.901
ELB improved by 0.00913653

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-843.595
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-592.763
ELB improved by 250.832

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-532.908
ELB improved by 59.8551

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-480.889
ELB improved by 52.019

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.292
ELB improved by 28.5971

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.199
ELB improved by 11.0924

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.759
ELB improved by 5.4402

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.889
ELB improved by 3.86982

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.517
ELB improved by 3.37259

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.297
ELB improved by 3.21951

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.112
ELB improved by 3.18486

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.933
ELB improved by 3.17957

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.778
ELB improved by 3.15493

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.713
ELB improved by 3.06452

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.855
ELB improved by 2.85783

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.352
ELB improved by 2.50387

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.312
ELB improved by 2.03954

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.737
ELB improved by 1.57528

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.537
ELB improved by 1.19933

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.63
ELB improved by 0.907591

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.958
ELB improved by 0.672204

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.462
ELB improved by 0.496123

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.084
ELB improved by 0.377151

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.786
ELB improved by 0.298706

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.54
ELB improved by 0.245456

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.332
ELB improved by 0.207735

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.153
ELB improved by 0.17983

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.994
ELB improved by 0.158336

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.853
ELB improved by 0.141216

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.726
ELB improved by 0.12722

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.61
ELB improved by 0.115551

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.505
ELB improved by 0.105673

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.407
ELB improved by 0.0972087

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.318
ELB improved by 0.0898824

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.234
ELB improved by 0.0834865

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.156
ELB improved by 0.0778608

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.083
ELB improved by 0.0728798

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.015
ELB improved by 0.068443

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.95
ELB improved by 0.0644694

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.89
ELB improved by 0.0608932

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.832
ELB improved by 0.0576602

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.777
ELB improved by 0.0547258

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.725
ELB improved by 0.052053

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.675
ELB improved by 0.0496112

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.628
ELB improved by 0.0473748

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.583
ELB improved by 0.0453224

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.539
ELB improved by 0.0434358

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.498
ELB improved by 0.0417

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.458
ELB improved by 0.0401016

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.419
ELB improved by 0.0386296

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.382
ELB improved by 0.0372739

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.346
ELB improved by 0.0360259

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.311
ELB improved by 0.0348776

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.277
ELB improved by 0.0338219

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.244
ELB improved by 0.032852

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.212
ELB improved by 0.0319616

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.181
ELB improved by 0.0311448

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.151
ELB improved by 0.0303958

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.121
ELB improved by 0.0297093

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.092
ELB improved by 0.0290797

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.063
ELB improved by 0.0285018

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.035
ELB improved by 0.0279707

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.008
ELB improved by 0.0274812

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.981
ELB improved by 0.0270287

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.954
ELB improved by 0.0266083

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.928
ELB improved by 0.0262155

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.902
ELB improved by 0.0258458

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.877
ELB improved by 0.025495

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.851
ELB improved by 0.0251588

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.827
ELB improved by 0.0248333

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.802
ELB improved by 0.0245148

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.778
ELB improved by 0.0241998

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.754
ELB improved by 0.0238848

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.73
ELB improved by 0.023567

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.707
ELB improved by 0.0232435

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.684
ELB improved by 0.0229119

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.662
ELB improved by 0.0225702

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.64
ELB improved by 0.0222166

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.618
ELB improved by 0.0218497

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.596
ELB improved by 0.0214686

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.575
ELB improved by 0.0210727

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.554
ELB improved by 0.0206619

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.534
ELB improved by 0.0202365

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.514
ELB improved by 0.0197969

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.495
ELB improved by 0.0193444

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.476
ELB improved by 0.0188802

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.458
ELB improved by 0.0184061

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.44
ELB improved by 0.0179242

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.422
ELB improved by 0.0174367

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.405
ELB improved by 0.0169462

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.389
ELB improved by 0.0164554

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.373
ELB improved by 0.0159673

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.358
ELB improved by 0.0154848

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.343
ELB improved by 0.0150112

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.328
ELB improved by 0.0145497

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.314
ELB improved by 0.0141036

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.3
ELB improved by 0.0136763

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.287
ELB improved by 0.0132713

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.274
ELB improved by 0.0128921

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.262
ELB improved by 0.0125425

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.249
ELB improved by 0.0122263

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.237
ELB improved by 0.0119477

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.226
ELB improved by 0.0117112

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.214
ELB improved by 0.0115217

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.203
ELB improved by 0.0113848

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.191
ELB improved by 0.0113069

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.18
ELB improved by 0.0112952

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.169
ELB improved by 0.0113584

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.157
ELB improved by 0.0115066

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.146
ELB improved by 0.0117519

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.133
ELB improved by 0.0121086

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.121
ELB improved by 0.0125942

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.108
ELB improved by 0.0132298

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.094
ELB improved by 0.014041

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.078
ELB improved by 0.0150592

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.062
ELB improved by 0.0163234

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.044
ELB improved by 0.0178825

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.024
ELB improved by 0.0197995

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.002
ELB improved by 0.0221571

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.977
ELB improved by 0.0250678

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.949
ELB improved by 0.0286871

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.915
ELB improved by 0.0332344

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.876
ELB improved by 0.0390153

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.83
ELB improved by 0.0464354

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.774
ELB improved by 0.0559644

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.706
ELB improved by 0.0679607

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.624
ELB improved by 0.0822282

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.526
ELB improved by 0.0973351

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.416
ELB improved by 0.110347

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.298
ELB improved by 0.118126

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.178
ELB improved by 0.119705

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.061
ELB improved by 0.1168

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.95
ELB improved by 0.111727

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.844
ELB improved by 0.105728

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.745
ELB improved by 0.0990709

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.653
ELB improved by 0.0918018

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.569
ELB improved by 0.0841671

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.492
ELB improved by 0.0765421

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.423
ELB improved by 0.0691294

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.361
ELB improved by 0.0617817

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.307
ELB improved by 0.0541389

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.261
ELB improved by 0.0460093

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.224
ELB improved by 0.0376864

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.194
ELB improved by 0.0298599

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.171
ELB improved by 0.0231798

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.153
ELB improved by 0.0179127

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.139
ELB improved by 0.0139499

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.128
ELB improved by 0.0110115

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.119
ELB improved by 0.00881683

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-879.064
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.102
ELB improved by 292.962

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.838
ELB improved by 60.2631

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.456
ELB improved by 40.3825

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465
ELB improved by 20.456

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.444
ELB improved by 9.55605

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.666
ELB improved by 4.77818

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.551
ELB improved by 3.11485

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.12
ELB improved by 2.43106

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.05
ELB improved by 2.06964

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.203
ELB improved by 1.84668

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.513
ELB improved by 1.6908

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.947
ELB improved by 1.56538

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.507
ELB improved by 1.44024

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.217
ELB improved by 1.28972

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.111
ELB improved by 1.10581

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.207
ELB improved by 0.904723

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.491
ELB improved by 0.715299

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.931
ELB improved by 0.560481

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.483
ELB improved by 0.44816

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.109
ELB improved by 0.374006

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.78
ELB improved by 0.328654

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.477
ELB improved by 0.302891

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.188
ELB improved by 0.289638

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.904
ELB improved by 0.284018

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.621
ELB improved by 0.282785

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.337
ELB improved by 0.283737

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.052
ELB improved by 0.285307

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.765
ELB improved by 0.286357

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.479
ELB improved by 0.286097

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.195
ELB improved by 0.284091

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.915
ELB improved by 0.280277

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.64
ELB improved by 0.274958

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.371
ELB improved by 0.268761

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.109
ELB improved by 0.262564

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.851
ELB improved by 0.257419

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.597
ELB improved by 0.254506

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.342
ELB improved by 0.255081

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.081
ELB improved by 0.260367

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.81
ELB improved by 0.271216

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.523
ELB improved by 0.28742

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.216
ELB improved by 0.307059

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.889
ELB improved by 0.327066

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.543
ELB improved by 0.345459

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.18
ELB improved by 0.362772

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.8
ELB improved by 0.380785

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.399
ELB improved by 0.400633

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.977
ELB improved by 0.422195

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.532
ELB improved by 0.44423

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.068
ELB improved by 0.464526

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.588
ELB improved by 0.480005

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.101
ELB improved by 0.486961

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.619
ELB improved by 0.481621

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.158
ELB improved by 0.461283

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.732
ELB improved by 0.425903

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.353
ELB improved by 0.379046

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.026
ELB improved by 0.327049

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.749
ELB improved by 0.276708

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.516
ELB improved by 0.233084

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.318
ELB improved by 0.198632

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.144
ELB improved by 0.173407

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.989
ELB improved by 0.155443

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.848
ELB improved by 0.14099

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.722
ELB improved by 0.125611

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.615
ELB improved by 0.107023

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.528
ELB improved by 0.0869681

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.459
ELB improved by 0.0688693

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.405
ELB improved by 0.0545145

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.361
ELB improved by 0.0437139

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.326
ELB improved by 0.0355837

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.296
ELB improved by 0.0293522

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.272
ELB improved by 0.0245071

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.251
ELB improved by 0.0207136

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.233
ELB improved by 0.0177335

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.218
ELB improved by 0.0153832

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.204
ELB improved by 0.0135176

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.192
ELB improved by 0.0120231

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.181
ELB improved by 0.0108118

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.172
ELB improved by 0.0098173

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.275   0.170   2.434

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.058	0.012	0.070
getPIPs	0.050	0.013	0.063
graper	0.075	0.027	0.102
makeExampleData	0.010	0.001	0.011
makeExampleDataWithUnequalGroups	0.011	0.002	0.013
plotELBO	0.345	0.040	0.385
plotGroupPenalties	1.106	0.091	1.197
plotPosterior	0.651	0.018	0.669
predict.graper	2.058	0.070	2.128
print.graper	0.049	0.013	0.062