Britta Velten
| Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026) |
| git_url: https://git.bioconductor.org/packages/graper |
| git_branch: RELEASE_3_23 |
| git_last_commit: 7354ec6 |
| git_last_commit_date: 2026-04-28 08:49:19 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4988 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4694 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 942/2415 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| graper 1.28.0 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for graper in R Universe. | ||||||||||||||
|
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: graper |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.28.0.tar.gz |
| StartedAt: 2026-04-29 01:02:56 -0400 (Wed, 29 Apr 2026) |
| EndedAt: 2026-04-29 01:04:28 -0400 (Wed, 29 Apr 2026) |
| EllapsedTime: 92.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: graper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.28.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-04-29 05:02:56 UTC
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.28.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.28.0’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’ g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++20 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(graper)
>
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-879.007
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-575.526
ELB improved by 303.481
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.064
ELB improved by 64.4617
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.561
ELB improved by 38.5027
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-456.952
ELB improved by 15.6099
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.727
ELB improved by 7.22437
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.718
ELB improved by 5.00929
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.372
ELB improved by 4.34557
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.246
ELB improved by 4.12635
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.256
ELB improved by 3.99036
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.498
ELB improved by 3.75802
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.173
ELB improved by 3.3244
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.455
ELB improved by 2.71794
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.369
ELB improved by 2.08592
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.807
ELB improved by 1.56249
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.618
ELB improved by 1.18864
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.689
ELB improved by 0.929642
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.953
ELB improved by 0.735679
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.369
ELB improved by 0.584225
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.898
ELB improved by 0.470487
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.511
ELB improved by 0.387028
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.187
ELB improved by 0.324112
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.912
ELB improved by 0.274799
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.677
ELB improved by 0.235376
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.473
ELB improved by 0.203778
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.295
ELB improved by 0.178494
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.136
ELB improved by 0.158221
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.995
ELB improved by 0.141847
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.866
ELB improved by 0.128487
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.749
ELB improved by 0.117476
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.64
ELB improved by 0.108328
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.54
ELB improved by 0.100692
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.445
ELB improved by 0.0943072
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.356
ELB improved by 0.0889807
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.272
ELB improved by 0.0845645
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.191
ELB improved by 0.0809443
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.113
ELB improved by 0.0780307
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.037
ELB improved by 0.0757539
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.963
ELB improved by 0.0740599
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.89
ELB improved by 0.0729081
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.818
ELB improved by 0.0722695
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.746
ELB improved by 0.0721256
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.673
ELB improved by 0.072468
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.6
ELB improved by 0.0732984
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.525
ELB improved by 0.0746285
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.449
ELB improved by 0.0764807
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.37
ELB improved by 0.0788889
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.288
ELB improved by 0.0818995
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.202
ELB improved by 0.0855722
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.112
ELB improved by 0.0899802
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.017
ELB improved by 0.0952106
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.916
ELB improved by 0.101362
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.807
ELB improved by 0.108543
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.69
ELB improved by 0.11686
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.564
ELB improved by 0.126414
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.427
ELB improved by 0.137276
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.277
ELB improved by 0.149471
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.114
ELB improved by 0.162954
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.937
ELB improved by 0.177581
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.744
ELB improved by 0.193095
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.534
ELB improved by 0.20912
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.309
ELB improved by 0.22516
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.069
ELB improved by 0.240613
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.814
ELB improved by 0.254785
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.547
ELB improved by 0.266881
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.271
ELB improved by 0.275989
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.99
ELB improved by 0.281057
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.709
ELB improved by 0.280937
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.435
ELB improved by 0.27456
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.173
ELB improved by 0.261317
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.932
ELB improved by 0.241489
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.715
ELB improved by 0.216438
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.527
ELB improved by 0.188334
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.367
ELB improved by 0.159569
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.235
ELB improved by 0.132197
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.128
ELB improved by 0.107616
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.041
ELB improved by 0.0865325
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.972
ELB improved by 0.0690916
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.917
ELB improved by 0.0550697
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.873
ELB improved by 0.0440506
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.837
ELB improved by 0.0355544
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.808
ELB improved by 0.0291188
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.784
ELB improved by 0.0243413
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.763
ELB improved by 0.0208958
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.744
ELB improved by 0.0185359
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.727
ELB improved by 0.017092
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.711
ELB improved by 0.0164674
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.694
ELB improved by 0.0166365
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.677
ELB improved by 0.0176471
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.657
ELB improved by 0.0196225
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.634
ELB improved by 0.0227605
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.607
ELB improved by 0.0273127
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.573
ELB improved by 0.0335116
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.532
ELB improved by 0.041387
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.482
ELB improved by 0.0504022
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.423
ELB improved by 0.0589545
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.358
ELB improved by 0.0642445
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.295
ELB improved by 0.0635566
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.238
ELB improved by 0.0568354
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.191
ELB improved by 0.0473575
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.152
ELB improved by 0.0387542
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.119
ELB improved by 0.0324488
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.091
ELB improved by 0.028129
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.066
ELB improved by 0.0250583
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.044
ELB improved by 0.0226416
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.023
ELB improved by 0.0204874
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.005
ELB improved by 0.0183708
iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.988
ELB improved by 0.0162058
iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.974
ELB improved by 0.0140167
iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.963
ELB improved by 0.0118923
iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.953
ELB improved by 0.00993411
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-898.325
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.033
ELB improved by 321.292
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-516.851
ELB improved by 60.1821
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-476.793
ELB improved by 40.0582
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.158
ELB improved by 17.6351
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.227
ELB improved by 6.93027
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.72
ELB improved by 4.50762
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.922
ELB improved by 3.79805
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.369
ELB improved by 3.55242
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.916
ELB improved by 3.45336
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.572
ELB improved by 3.34372
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.452
ELB improved by 3.12014
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.717
ELB improved by 2.73513
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.487
ELB improved by 2.22972
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.779
ELB improved by 1.70793
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.519
ELB improved by 1.26053
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.598
ELB improved by 0.920764
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.919
ELB improved by 0.679501
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.404
ELB improved by 0.514233
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.001
ELB improved by 0.403316
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.672
ELB improved by 0.329475
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.391
ELB improved by 0.280099
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.145
ELB improved by 0.246584
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.922
ELB improved by 0.223186
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.716
ELB improved by 0.205845
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.524
ELB improved by 0.191396
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.347
ELB improved by 0.177461
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.184
ELB improved by 0.162882
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.036
ELB improved by 0.14796
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.902
ELB improved by 0.133877
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.781
ELB improved by 0.121686
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.669
ELB improved by 0.111785
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.565
ELB improved by 0.104024
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.467
ELB improved by 0.0980332
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.373
ELB improved by 0.0934411
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.283
ELB improved by 0.0899623
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.196
ELB improved by 0.0874037
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.11
ELB improved by 0.0856475
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.026
ELB improved by 0.0846308
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.941
ELB improved by 0.084327
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.857
ELB improved by 0.0847272
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.771
ELB improved by 0.0858179
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.683
ELB improved by 0.0875551
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.593
ELB improved by 0.0898355
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.501
ELB improved by 0.0924779
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.406
ELB improved by 0.0952355
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.308
ELB improved by 0.0978581
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.208
ELB improved by 0.100194
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.105
ELB improved by 0.102279
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.001
ELB improved by 0.10433
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.894
ELB improved by 0.106615
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.785
ELB improved by 0.109229
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.673
ELB improved by 0.111903
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.559
ELB improved by 0.11403
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.444
ELB improved by 0.11502
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.329
ELB improved by 0.114789
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.216
ELB improved by 0.113884
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.102
ELB improved by 0.113113
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.989
ELB improved by 0.113094
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.875
ELB improved by 0.114124
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.759
ELB improved by 0.116278
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.639
ELB improved by 0.119546
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.515
ELB improved by 0.123899
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.386
ELB improved by 0.129311
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.25
ELB improved by 0.135741
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.107
ELB improved by 0.143112
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.956
ELB improved by 0.151274
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.796
ELB improved by 0.159974
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.627
ELB improved by 0.168835
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.45
ELB improved by 0.177371
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.265
ELB improved by 0.185038
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.073
ELB improved by 0.191316
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.878
ELB improved by 0.1958
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.679
ELB improved by 0.19823
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.481
ELB improved by 0.198441
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.285
ELB improved by 0.196286
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.093
ELB improved by 0.191688
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.908
ELB improved by 0.185009
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.73
ELB improved by 0.177579
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.559
ELB improved by 0.171726
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.389
ELB improved by 0.169685
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.217
ELB improved by 0.171601
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.044
ELB improved by 0.173852
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.873
ELB improved by 0.170103
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.717
ELB improved by 0.156218
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.583
ELB improved by 0.134223
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.473
ELB improved by 0.109965
iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.385
ELB improved by 0.0881997
iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.314
ELB improved by 0.0708552
iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.256
ELB improved by 0.0579797
iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.207
ELB improved by 0.0489343
iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.164
ELB improved by 0.0430209
iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.124
ELB improved by 0.0397174
iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.086
ELB improved by 0.0387579
iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.045
ELB improved by 0.0401695
iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.001
ELB improved by 0.0442699
iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.95
ELB improved by 0.0514965
iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.888
ELB improved by 0.061718
iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.815
ELB improved by 0.0726675
iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.737
ELB improved by 0.0786861
iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.663
ELB improved by 0.073854
iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.604
ELB improved by 0.0590068
iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.562
ELB improved by 0.0415821
iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.535
ELB improved by 0.0276339
iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.516
ELB improved by 0.0184874
iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.503
ELB improved by 0.0130087
iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.493
ELB improved by 0.00979343
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-846.926
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-562.12
ELB improved by 284.806
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-505.442
ELB improved by 56.6774
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.262
ELB improved by 32.1809
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.164
ELB improved by 14.0978
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.739
ELB improved by 6.42476
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.901
ELB improved by 3.83826
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.845
ELB improved by 3.05569
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.033
ELB improved by 2.81185
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.319
ELB improved by 2.71445
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.726
ELB improved by 2.59264
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.387
ELB improved by 2.33898
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.452
ELB improved by 1.93472
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.975
ELB improved by 1.4775
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.881
ELB improved by 1.09376
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.052
ELB improved by 0.828715
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.4
ELB improved by 0.652306
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.87
ELB improved by 0.530439
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.419
ELB improved by 0.450305
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.014
ELB improved by 0.405019
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.629
ELB improved by 0.385707
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.245
ELB improved by 0.383702
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.852
ELB improved by 0.392674
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.444
ELB improved by 0.408678
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.014
ELB improved by 0.42933
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.561
ELB improved by 0.452987
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.083
ELB improved by 0.478337
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.579
ELB improved by 0.504333
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.048
ELB improved by 0.530228
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.493
ELB improved by 0.555457
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.914
ELB improved by 0.579413
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.312
ELB improved by 0.6015
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.69
ELB improved by 0.621815
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.048
ELB improved by 0.641997
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.383
ELB improved by 0.665394
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.687
ELB improved by 0.696277
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.95
ELB improved by 0.737001
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.169
ELB improved by 0.780076
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.366
ELB improved by 0.803801
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.568
ELB improved by 0.797222
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.767
ELB improved by 0.801164
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.832
ELB improved by 0.935601
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.621
ELB improved by 1.21029
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.486
ELB improved by 1.13557
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.652
ELB improved by 0.833448
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.04
ELB improved by 0.611983
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.563
ELB improved by 0.477372
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.169
ELB improved by 0.393586
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.841
ELB improved by 0.327972
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.577
ELB improved by 0.264308
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.372
ELB improved by 0.205322
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.214
ELB improved by 0.157683
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.092
ELB improved by 0.122617
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.994
ELB improved by 0.0977054
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.914
ELB improved by 0.0799707
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.847
ELB improved by 0.0670372
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.79
ELB improved by 0.0572694
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.74
ELB improved by 0.0496165
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.696
ELB improved by 0.043424
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.658
ELB improved by 0.0382853
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.624
ELB improved by 0.0339429
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.594
ELB improved by 0.0302266
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.567
ELB improved by 0.0270182
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.543
ELB improved by 0.0242313
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.521
ELB improved by 0.0217996
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.501
ELB improved by 0.0196706
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.484
ELB improved by 0.0178012
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.467
ELB improved by 0.0161559
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.453
ELB improved by 0.0147047
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.439
ELB improved by 0.0134221
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.427
ELB improved by 0.0122864
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.416
ELB improved by 0.011279
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.405
ELB improved by 0.0103839
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.396
ELB improved by 0.00958701
ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.027
ELB improved by inf
iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.304
ELB improved by 288.723
iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-513.503
ELB improved by 60.8009
iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.568
ELB improved by 38.9346
iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.401
ELB improved by 17.1668
iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.374
ELB improved by 7.02749
iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.581
ELB improved by 3.79264
iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.902
ELB improved by 2.6795
iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.658
ELB improved by 2.24421
iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.59
ELB improved by 2.0679
iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.599
ELB improved by 1.99083
iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.646
ELB improved by 1.953
iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.718
ELB improved by 1.92756
iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.823
ELB improved by 1.89513
iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.988
ELB improved by 1.83466
iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.263
ELB improved by 1.7255
iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.706
ELB improved by 1.55737
iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.367
ELB improved by 1.33895
iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.269
ELB improved by 1.09787
iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.399
ELB improved by 0.869624
iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.718
ELB improved by 0.681125
iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.176
ELB improved by 0.541746
iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.73
ELB improved by 0.446745
iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.344
ELB improved by 0.385574
iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.996
ELB improved by 0.347785
iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.671
ELB improved by 0.325242
iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.359
ELB improved by 0.312231
iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.054
ELB improved by 0.304894
iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.753
ELB improved by 0.300628
iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.456
ELB improved by 0.297654
iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.161
ELB improved by 0.294756
iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.87
ELB improved by 0.291144
iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.583
ELB improved by 0.286392
iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.303
ELB improved by 0.280389
iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.03
ELB improved by 0.273302
iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.764
ELB improved by 0.265515
iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.507
ELB improved by 0.257566
iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.256
ELB improved by 0.250097
iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.013
ELB improved by 0.243821
iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.773
ELB improved by 0.239524
iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.535
ELB improved by 0.238048
iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.295
ELB improved by 0.240189
iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.048
ELB improved by 0.246324
iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.793
ELB improved by 0.255632
iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.527
ELB improved by 0.265463
iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.255
ELB improved by 0.272424
iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.979
ELB improved by 0.275488
iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.702
ELB improved by 0.277388
iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.42
ELB improved by 0.282162
iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.128
ELB improved by 0.292284
iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.82
ELB improved by 0.307242
iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.498
ELB improved by 0.32276
iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.165
ELB improved by 0.332316
iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.833
ELB improved by 0.331985
iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.511
ELB improved by 0.322719
iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.203
ELB improved by 0.307313
iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.915
ELB improved by 0.288507
iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.644
ELB improved by 0.270868
iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.38
ELB improved by 0.263989
iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.096
ELB improved by 0.284318
iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.752
ELB improved by 0.343256
iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.359
ELB improved by 0.393805
iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.019
ELB improved by 0.340002
iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.792
ELB improved by 0.226846
iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.641
ELB improved by 0.151195
iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.527
ELB improved by 0.113098
iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.434
ELB improved by 0.0931181
iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.353
ELB improved by 0.0812783
iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.281
ELB improved by 0.0723805
iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.217
ELB improved by 0.0636299
iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.163
ELB improved by 0.054329
iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.117
ELB improved by 0.0454277
iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.079
ELB improved by 0.0383566
iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.045
ELB improved by 0.0340609
iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.012
ELB improved by 0.0328846
iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.977
ELB improved by 0.0349316
iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.937
ELB improved by 0.0402778
iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.888
ELB improved by 0.0486117
iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.83
ELB improved by 0.058094
iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.766
ELB improved by 0.0642254
iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.704
ELB improved by 0.0616533
iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.654
ELB improved by 0.0498611
iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.619
ELB improved by 0.0348877
iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.597
ELB improved by 0.0228018
iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.581
ELB improved by 0.0151569
iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.571
ELB improved by 0.0107772
iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.562
ELB improved by 0.00825919
ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
>
> proc.time()
user system elapsed
2.368 0.219 2.576
graper.Rcheck/graper-Ex.timings
| name | user | system | elapsed | |
| coef.graper | 0.047 | 0.032 | 0.080 | |
| getPIPs | 0.073 | 0.033 | 0.105 | |
| graper | 0.085 | 0.016 | 0.101 | |
| makeExampleData | 0.01 | 0.00 | 0.01 | |
| makeExampleDataWithUnequalGroups | 0.011 | 0.000 | 0.011 | |
| plotELBO | 0.287 | 0.039 | 0.326 | |
| plotGroupPenalties | 0.966 | 0.011 | 0.977 | |
| plotPosterior | 0.649 | 0.015 | 0.664 | |
| predict.graper | 2.069 | 0.073 | 2.142 | |
| print.graper | 0.054 | 0.011 | 0.065 | |