| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-11-12 11:32 -0500 (Wed, 12 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4823 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 871/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ggspavis 1.17.0 (landing page) Lukas M. Weber
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the ggspavis package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggspavis.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ggspavis |
| Version: 1.17.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggspavis |
| StartedAt: 2025-11-11 17:52:51 -0500 (Tue, 11 Nov 2025) |
| EndedAt: 2025-11-11 17:54:38 -0500 (Tue, 11 Nov 2025) |
| EllapsedTime: 107.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggspavis
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* checking for file ‘ggspavis/DESCRIPTION’ ... OK
* preparing ‘ggspavis’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ggspavis_overview.Rmd’ using rmarkdown
Quitting from ggspavis_overview.Rmd:223-240 [loadvhd8sub]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [api.osf.io]:
SSL connection timeout
---
Backtrace:
▆
1. ├─OSTA.data::OSTA.data_load(id)
2. │ ├─base::match.arg(id, OSTA.data_list(url))
3. │ └─OSTA.data::OSTA.data_list(url)
4. │ └─osfr::osf_retrieve_node(url)
5. │ └─osfr:::.osf_node_retrieve(id)
6. │ └─osfr:::.osf_request("get", path)
7. │ └─cli$retry(...)
8. │ └─crul (local) verb_func(...)
9. │ └─private$make_request(rr, mock)
10. │ └─crul:::crul_fetch(opts)
11. │ └─curl::curl_fetch_memory(x$url$url, handle = x$url$handle)
12. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggspavis_overview.Rmd' failed with diagnostics:
Timeout was reached [api.osf.io]:
SSL connection timeout
--- failed re-building ‘ggspavis_overview.Rmd’
SUMMARY: processing the following file failed:
‘ggspavis_overview.Rmd’
Error: Vignette re-building failed.
Execution halted