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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gDRstyle.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gDRstyle_1.9.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/gDRstyle.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-10 20:08:43 UTC
* using option ‘--no-vignettes’
* checking for file ‘gDRstyle/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRstyle’ version ‘1.9.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRstyle’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘gDRstyle-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: checkPackage
> ### Title: Check R package
> ### Aliases: checkPackage
> ### Keywords: check
> 
> ### ** Examples
> 
> checkPackage(
+   pkgName = "fakePkg",
+   repoDir = system.file(package = "gDRstyle", "tst_pkgs", "dummy_pkg"),
+   fail_on = "error"
+ )
Lint
##------ Tue Mar 10 16:08:54 2026 ------##
Linting file: /Library/Frameworks/R.framework/Versions/4.6/Resources/library/gDRstyle/tst_pkgs/dummy_pkg/R/test.R
Linting file: /Library/Frameworks/R.framework/Versions/4.6/Resources/library/gDRstyle/tst_pkgs/dummy_pkg/tests/testthat.R
Linting file: /Library/Frameworks/R.framework/Versions/4.6/Resources/library/gDRstyle/tst_pkgs/dummy_pkg/tests/testthat/test-pkg.R
All files OK!
Tests
##------ Tue Mar 10 16:08:54 2026 ------##
✔ | F W  S  OK | Context

⠏ |          0 | pkg                                                            
✔ |          1 | pkg

══ Results ═════════════════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
Pkgdown
── Initialising site ───────────────────────────────────────────────────────────
Copying <pkgdown>/BS3/assets/bootstrap-toc.css to bootstrap-toc.css
Copying <pkgdown>/BS3/assets/bootstrap-toc.js to bootstrap-toc.js
Copying <pkgdown>/BS3/assets/docsearch.css to docsearch.css
Copying <pkgdown>/BS3/assets/docsearch.js to docsearch.js
Copying <pkgdown>/BS3/assets/link.svg to link.svg
Copying <pkgdown>/BS3/assets/pkgdown.css to pkgdown.css
Copying <pkgdown>/BS3/assets/pkgdown.js to pkgdown.js
── Building function reference ─────────────────────────────────────────────────
Writing `reference/index.html`
Reading man/tstCharLimitLintr.Rd
Writing `reference/tstCharLimitLintr.html`
Check
##------ Tue Mar 10 16:08:55 2026 ------##
Error: Could not find tools necessary to compile a package
Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • empty test (1): 'test-dependencies.R:16:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-check.R:5:3'): package check works correct ───────────────────
  Expected `checkPackage("fakePkg", dir, fail_on = "error")` not to throw any errors.
  Actually got a <simpleError> with message:
    Could not find tools necessary to compile a package
    Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.
  
  [ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/gDRstyle.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gDRstyle
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘gDRstyle’ ...
** this is package ‘gDRstyle’ version ‘1.9.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gDRstyle)

R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(gDRstyle)
> 
> test_check("gDRstyle")
── R CMD build ─────────────────────────────────────────────────────────────────
* checking for file ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpS3QGsv/file45384b85594/dummy_pkg/DESCRIPTION’ ... OK
* preparing ‘fakePkg’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘fakePkg_1.0.tar.gz’

* installing *source* package ‘fakePkg’ ...
** this is package ‘fakePkg’ version ‘1.0’
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fakePkg)
##------ Tue Mar 10 16:08:58 2026 ------##
##------ Tue Mar 10 16:08:58 2026 ------##
✔ | F W  S  OK | Context

⠏ |          0 | pkg                                                            
✔ |          1 | pkg

══ Results ═════════════════════════════════════════════════════════════════════
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
##------ Tue Mar 10 16:08:59 2026 ------##
Saving _problems/test-check-5.R
[ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-dependencies.R:16:1'

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-check.R:5:3'): package check works correct ───────────────────
Expected `checkPackage("fakePkg", dir, fail_on = "error")` not to throw any errors.
Actually got a <simpleError> with message:
  Could not find tools necessary to compile a package
  Call `pkgbuild::check_build_tools(debug = TRUE)` to diagnose the problem.

[ FAIL 1 | WARN 0 | SKIP 1 | PASS 25 ]
Error:
! Test failures.
Execution halted