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This page was generated on 2025-11-14 11:35 -0500 (Fri, 14 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4825
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4547
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 794/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.9.1  (landing page)
Arkadiusz Gladki
Snapshot Date: 2025-11-13 13:40 -0500 (Thu, 13 Nov 2025)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: devel
git_last_commit: 16632cf
git_last_commit_date: 2025-10-30 05:32:55 -0500 (Thu, 30 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for gDRimport on nebbiolo1

To the developers/maintainers of the gDRimport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gDRimport
Version: 1.9.1
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gDRimport
StartedAt: 2025-11-13 17:41:45 -0500 (Thu, 13 Nov 2025)
EndedAt: 2025-11-13 17:42:29 -0500 (Thu, 13 Nov 2025)
EllapsedTime: 44.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gDRimport
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* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* preparing ‘gDRimport’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ConvertingMAEtoPharmacoSet.Rmd’ using rmarkdown
--- finished re-building ‘ConvertingMAEtoPharmacoSet.Rmd’

--- re-building ‘ConvertingPharmacoSetToGDR.Rmd’ using rmarkdown

Quitting from ConvertingPharmacoSetToGDR.Rmd:46-59 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ConvertingPharmacoSetToGDR.Rmd' failed with diagnostics:
`with_mock()` was deprecated in testthat 3.2.0 and is now defunct.
ℹ Please use `with_mocked_bindings()` instead.
--- failed re-building ‘ConvertingPharmacoSetToGDR.Rmd’

--- re-building ‘gDRimport.Rmd’ using rmarkdown
--- finished re-building ‘gDRimport.Rmd’

SUMMARY: processing the following file failed:
  ‘ConvertingPharmacoSetToGDR.Rmd’

Error: Vignette re-building failed.
Execution halted