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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 752/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowPeaks 1.57.0 (landing page) Yongchao Ge
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the flowPeaks package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPeaks.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowPeaks |
| Version: 1.57.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPeaks |
| StartedAt: 2025-11-12 16:16:12 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 16:16:20 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 8.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPeaks
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* checking for file ‘flowPeaks/DESCRIPTION’ ... OK
* preparing ‘flowPeaks’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘flowPeaks-guide.Rnw’ using Sweave
Starting the flow Peaks analysis...
Task A: compute kmeans...
...finished summarization at 0.36 sec
Task B: find peaks...
finished at 0.388 sec
2025-11-12 16:16:18.557 R[61406:2143047] XType: Using static font registry.
Starting the flow Peaks analysis...
Task A: compute kmeans...
...finished summarization at 0.224 sec
Task B: find peaks...
finished at 0.245 sec
Loading required package: flowCore
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘flowCore’
Error: processing vignette 'flowPeaks-guide.Rnw' failed with diagnostics:
chunk 17 (label = stage7)
Error in read.FCS(system.file("extdata", "0877408774.B08", package = "flowCore")) :
could not find function "read.FCS"
--- failed re-building ‘flowPeaks-guide.Rnw’
SUMMARY: processing the following file failed:
‘flowPeaks-guide.Rnw’
Error: Vignette re-building failed.
Execution halted