| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-02-13 11:32 -0500 (Fri, 13 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4863 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 291/2352 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cBioPortalData 2.23.4 (landing page) Marcel Ramos
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for cBioPortalData in R Universe. | ||||||||||||||
|
To the developers/maintainers of the cBioPortalData package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cBioPortalData.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cBioPortalData |
| Version: 2.23.4 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cBioPortalData |
| StartedAt: 2026-02-12 16:44:39 -0500 (Thu, 12 Feb 2026) |
| EndedAt: 2026-02-12 16:45:35 -0500 (Thu, 12 Feb 2026) |
| EllapsedTime: 56.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cBioPortalData
###
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* checking for file ‘cBioPortalData/DESCRIPTION’ ... OK
* preparing ‘cBioPortalData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘cBioPortalData.Rmd’ using rmarkdown
Quitting from cBioPortalData.Rmd:85-89 [get_studies]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_disk()`:
! Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
---
Backtrace:
▆
1. ├─cBioPortalData::cBioPortal()
2. │ ├─base::withCallingHandlers(...)
3. │ └─AnVIL::Service(...)
4. │ └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. │ └─httr::GET(...)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_disk(req$output, req$url, handle)
9. │ └─curl::curl_fetch_disk(url, x$path, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cBioPortalData.Rmd' failed with diagnostics:
Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
--- failed re-building ‘cBioPortalData.Rmd’
--- re-building ‘cBioPortalDataErrors.Rmd’ using rmarkdown
--- finished re-building ‘cBioPortalDataErrors.Rmd’
--- re-building ‘cBioPortalRClient.Rmd’ using rmarkdown
Quitting from cBioPortalRClient.Rmd:73-75 [cbioportal_client]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_disk()`:
! Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
---
Backtrace:
▆
1. ├─cBioPortalData::cBioPortal()
2. │ ├─base::withCallingHandlers(...)
3. │ └─AnVIL::Service(...)
4. │ └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. │ └─httr::GET(...)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_disk(req$output, req$url, handle)
9. │ └─curl::curl_fetch_disk(url, x$path, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cBioPortalRClient.Rmd' failed with diagnostics:
Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
--- failed re-building ‘cBioPortalRClient.Rmd’
--- re-building ‘cgdsrMigration.Rmd’ using rmarkdown
Quitting from cgdsrMigration.Rmd:41-48 [cbioportal_setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_disk()`:
! Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
---
Backtrace:
▆
1. ├─cBioPortalData::cBioPortal(...)
2. │ ├─base::withCallingHandlers(...)
3. │ └─AnVIL::Service(...)
4. │ └─AnVIL:::.service_get_api_file(api_reference_url, api_reference_headers)
5. │ └─httr::GET(...)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_disk(req$output, req$url, handle)
9. │ └─curl::curl_fetch_disk(url, x$path, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cgdsrMigration.Rmd' failed with diagnostics:
Couldn't resolve host name [www.cbioportal.org]:
Could not resolve host: www.cbioportal.org
--- failed re-building ‘cgdsrMigration.Rmd’
SUMMARY: processing the following files failed:
‘cBioPortalData.Rmd’ ‘cBioPortalRClient.Rmd’ ‘cgdsrMigration.Rmd’
Error: Vignette re-building failed.
Execution halted