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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
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Package 212/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomformat 1.39.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/biomformat
git_branch: devel
git_last_commit: 7f14801
git_last_commit_date: 2025-10-29 10:29:00 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

INSTALL results for biomformat on kjohnson3

To the developers/maintainers of the biomformat package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomformat.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biomformat
Version: 1.39.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biomformat
StartedAt: 2025-11-12 15:17:40 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 15:17:43 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 3.5 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biomformat
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
ERROR: dependency ‘rhdf5’ is not available for package ‘biomformat’
Perhaps try a variation of:
install.packages('rhdf5')
* removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/biomformat’