Johannes Rainer
| Snapshot Date: 2026-05-19 13:40 -0400 (Tue, 19 May 2026) |
| git_url: https://git.bioconductor.org/packages/SpectriPy |
| git_branch: RELEASE_3_23 |
| git_last_commit: 9d21f21 |
| git_last_commit_date: 2026-05-12 02:11:07 -0400 (Tue, 12 May 2026) |
| Back to Build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-20 11:32 -0400 (Wed, 20 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4995 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2144/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpectriPy 1.2.1 (landing page) Johannes Rainer
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| See other builds for SpectriPy in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SpectriPy package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpectriPy.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SpectriPy |
| Version: 1.2.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SpectriPy_1.2.1.tar.gz |
| StartedAt: 2026-05-20 05:23:52 -0400 (Wed, 20 May 2026) |
| EndedAt: 2026-05-20 05:38:59 -0400 (Wed, 20 May 2026) |
| EllapsedTime: 907.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SpectriPy.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:SpectriPy.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings SpectriPy_1.2.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/SpectriPy.Rcheck’
* using R version 4.6.0 RC (2026-04-17 r89917)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* current time: 2026-05-20 09:23:52 UTC
* checking for file ‘SpectriPy/DESCRIPTION’ ... OK
* this is package ‘SpectriPy’ version ‘1.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SpectriPy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘Spectra:::.check_peaks_data_value’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MsBackendPy 5.812 0.973 6.656
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.23-bioc/meat/SpectriPy.Rcheck/00check.log’
for details.
SpectriPy.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL SpectriPy ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’ * installing *source* package ‘SpectriPy’ ... ** this is package ‘SpectriPy’ version ‘1.2.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpectriPy)
SpectriPy.Rcheck/tests/testthat.Rout
R version 4.6.0 RC (2026-04-17 r89917) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Spectra)
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: 'generics'
The following objects are masked from 'package:base':
as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
setequal, union
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
unsplit, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:utils':
findMatches
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: BiocParallel
> library(SpectriPy)
Loading required package: reticulate
> library(MsBackendMgf)
>
> fl <- system.file("extdata", "mgf", "test.mgf", package = "SpectriPy")
> s <- Spectra(fl, source = MsBackendMgf())
Start data import from 1 files ... done
> s <- setBackend(s, MsBackendPy(), pythonVariableName = "py_be")
>
> be <- s@backend
>
> test_check("SpectriPy")
2026-05-20 05:30:01,489:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,490:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,491:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,492:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,493:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,494:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,495:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,496:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,497:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,497:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,498:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,499:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,500:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,501:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,502:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,502:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,503:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,504:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,505:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,506:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,506:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,507:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,508:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,509:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,510:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,511:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,511:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,512:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,513:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,514:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,515:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,515:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,516:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,517:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,518:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,519:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,520:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,520:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,521:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,522:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,523:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,524:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,524:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,525:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,526:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,527:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,528:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,529:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,529:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,530:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,531:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,532:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,533:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,533:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,534:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,535:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,536:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,537:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,537:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,538:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,539:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,540:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,541:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,542:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,542:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,543:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,544:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,545:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,546:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,547:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,547:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,548:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,549:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,550:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,551:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,551:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,552:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,553:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,554:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,555:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,556:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,556:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,557:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,558:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,559:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,560:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,561:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,561:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,562:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,563:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,564:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,565:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,566:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,566:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,567:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,568:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,569:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,570:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,570:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:01,571:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 25%|██▌ | 1/4 [00:02<00:07, 2.55s/it]
Calculating similarities: 100%|██████████| 4/4 [00:02<00:00, 1.57it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 4922.89it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 3844.46it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 4/4 [00:00<00:00, 5297.51it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 6278.90it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 4647.43it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3623.59it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2325.00it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3628.29it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3693.79it/s]
Calculating similarities: 0%| | 0/4 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 2/4 [00:00<00:00, 2315.38it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2524.41it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 2388.56it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:00<00:00, 1.62it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3.24it/s]
Calculating similarities: 0%| | 0/2 [00:00<?, ?it/s]
Calculating similarities: 50%|█████ | 1/2 [00:00<00:00, 1.57it/s]
Calculating similarities: 100%|██████████| 2/2 [00:00<00:00, 3.13it/s]
2026-05-20 05:30:17,755:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,809:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,809:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,810:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,871:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,872:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:17,873:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,125:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,126:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,127:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,156:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,157:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,158:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,420:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,421:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,422:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,436:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,437:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
2026-05-20 05:30:18,437:WARNING:matchms:add_precursor_mz:No precursor_mz found in metadata.
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3370.27it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3625.94it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 2768.06it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 4009.85it/s]
Processing spectra: 0%| | 0/4 [00:00<?, ?it/s]
Processing spectra: 100%|██████████| 4/4 [00:00<00:00, 3887.21it/s]
[ FAIL 0 | WARN 15 | SKIP 1 | PASS 777 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_zzz.R:16:1'
[ FAIL 0 | WARN 15 | SKIP 1 | PASS 777 ]
>
> ## TODO: add tests from the Spectra unit test suite!
>
> ## Run the MsBackend spectra variable test suite
> test_suite <- system.file("test_backends", "test_MsBackend",
+ package = "Spectra")
>
> ## Run single test file.
> ## res <- test_dir(test_suite, stop_on_failure = TRUE)
>
> proc.time()
user system elapsed
38.205 3.481 41.048
SpectriPy.Rcheck/SpectriPy-Ex.timings
| name | user | system | elapsed | |
| MsBackendPy | 5.812 | 0.973 | 6.656 | |
| compareSpectriPy | 2.473 | 0.328 | 2.833 | |
| conversion | 0.400 | 0.350 | 0.542 | |
| filterSpectriPy | 0.202 | 0.023 | 0.226 | |
| pyspec_copy_on_replace | 0.759 | 0.563 | 0.916 | |