Back to Multiple platform build/check report for BioC 3.23:   simplified   long
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This page was generated on 2026-04-30 11:35 -0400 (Thu, 30 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4718
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

All results for package ShortRead


To the developers/maintainers of the ShortRead package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ShortRead.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Package 2052/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ShortRead 1.70.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2026-04-29 13:40 -0400 (Wed, 29 Apr 2026)
git_url: https://git.bioconductor.org/packages/ShortRead
git_branch: RELEASE_3_23
git_last_commit: ee5a413
git_last_commit_date: 2026-04-28 08:32:53 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for ShortRead in R Universe.


Results for Bioconductor software packages that depend directly on package ShortRead

QUICK STATSOS / ArchINSTALLBUILDCHECKBUILD BIN
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64
0030
0228
00622
kjohnson3macOS 13.7.7 Ventura / arm64
0030
0228
00721
0028
Package 1/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.34.0  (landing page)
Eivind Valen
git_last_commit: 8323cb7
git_last_commit_date: 2026-04-28 08:46:24 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for amplican in R Universe.
Package 2/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basecallQC 1.36.0  (landing page)
Thomas Carroll
git_last_commit: 88681cf
git_last_commit_date: 2026-04-28 08:45:29 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for basecallQC in R Universe.
Package 3/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEAT 1.50.0  (landing page)
Kemal Akman
git_last_commit: bab1e9e
git_last_commit_date: 2026-04-28 08:38:33 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for BEAT in R Universe.
Package 4/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.18.0  (landing page)
Wenjie Sun
git_last_commit: 18ef734
git_last_commit_date: 2026-04-28 08:57:27 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for CellBarcode in R Universe.
Package 5/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.62.0  (landing page)
Bioconductor Package Maintainer
git_last_commit: d5a83b1
git_last_commit_date: 2026-04-28 08:33:59 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for chipseq in R Universe.
Package 6/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseqR 1.66.0  (landing page)
Peter Humburg
git_last_commit: 72c8efd
git_last_commit_date: 2026-04-28 08:34:18 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for ChIPseqR in R Universe.
Package 7/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPsim 1.66.0  (landing page)
Peter Humburg
git_last_commit: 324ae9c
git_last_commit_date: 2026-04-28 08:34:09 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for ChIPsim in R Universe.
Package 8/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CircSeqAlignTk 1.14.0  (landing page)
Jianqiang Sun
git_last_commit: bee728a
git_last_commit_date: 2026-04-28 08:59:07 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for CircSeqAlignTk in R Universe.
Package 9/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dada2 1.40.0  (landing page)
Benjamin Callahan
git_last_commit: 52cd78e
git_last_commit_date: 2026-04-28 08:42:46 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for dada2 in R Universe.
Package 10/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.48.0  (landing page)
Nicolas Delhomme
git_last_commit: ba639cf
git_last_commit_date: 2026-04-28 08:36:10 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for easyRNASeq in R Universe.
Package 11/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDASeq 2.46.0  (landing page)
Davide Risso
git_last_commit: f809958
git_last_commit_date: 2026-04-28 08:35:49 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for EDASeq in R Universe.
Package 12/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
esATAC 1.34.0  (landing page)
Zheng Wei
git_last_commit: 279243b
git_last_commit_date: 2026-04-28 08:46:56 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for esATAC in R Universe.
Package 13/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.30.0  (landing page)
Leandro Roser
git_last_commit: e3ad51f
git_last_commit_date: 2026-04-28 08:48:05 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for FastqCleaner in R Universe.
Package 14/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FLAMES 2.6.0  (landing page)
Changqing Wang
git_last_commit: 407178b
git_last_commit_date: 2026-04-28 08:56:31 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for FLAMES in R Universe.
Package 15/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fraq 1.0.0  (landing page)
Travers Ching
git_last_commit: 0144746
git_last_commit_date: 2026-04-28 09:06:38 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for fraq in R Universe.
Package 16/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOTHiC 1.48.0  (landing page)
Borbala Mifsud
git_last_commit: d9e409f
git_last_commit_date: 2026-04-28 08:50:28 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for GOTHiC in R Universe.
Package 17/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
icetea 1.30.0  (landing page)
Vivek Bhardwaj
git_last_commit: 0845793
git_last_commit_date: 2026-04-28 08:48:11 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for icetea in R Universe.
Package 18/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IONiseR 2.36.0  (landing page)
Mike Smith
git_last_commit: fac0d66
git_last_commit_date: 2026-04-28 08:41:26 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for IONiseR in R Universe.
Package 19/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabinR 2.0.0  (landing page)
Anestis Gkanogiannis
git_last_commit: 0524acb
git_last_commit_date: 2026-04-28 08:59:25 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for metabinR in R Universe.
Package 20/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nucleR 2.44.0  (landing page)
Alba Sala
git_last_commit: dee65e9
git_last_commit_date: 2026-04-28 08:35:37 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for nucleR in R Universe.
Package 21/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OTUbase 1.62.0  (landing page)
Daniel Beck
git_last_commit: 6e5f294
git_last_commit_date: 2026-04-28 08:34:51 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for OTUbase in R Universe.
Package 22/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
posDemux 1.0.0  (landing page)
Jakob Peder Pettersen
git_last_commit: 053127f
git_last_commit_date: 2026-04-28 09:06:04 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for posDemux in R Universe.
Package 23/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QuasR 1.52.0  (landing page)
Michael Stadler
git_last_commit: 162f60c
git_last_commit_date: 2026-04-28 08:37:12 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
See other builds for QuasR in R Universe.
Package 24/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.62.0  (landing page)
Hans-Ulrich Klein
git_last_commit: 495e7e3
git_last_commit_date: 2026-04-28 08:34:56 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for R453Plus1Toolbox in R Universe.
Package 25/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rqc 1.46.0  (landing page)
Welliton Souza
git_last_commit: baf1c11
git_last_commit_date: 2026-04-28 08:40:09 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rqc in R Universe.
Package 26/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RSVSim 1.52.0  (landing page)
Christoph Bartenhagen
git_last_commit: 44b6005
git_last_commit_date: 2026-04-28 08:37:10 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for RSVSim in R Universe.
Package 27/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scruff 1.30.0  (landing page)
Zhe Wang
git_last_commit: b8ea4f7
git_last_commit_date: 2026-04-28 08:48:20 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for scruff in R Universe.
Package 28/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
segmentSeq 2.46.0  (landing page)
Samuel Granjeaud
git_last_commit: b5f4013
git_last_commit_date: 2026-04-28 08:34:29 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for segmentSeq in R Universe.
Package 29/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 2.18.0  (landing page)
Thomas Girke
git_last_commit: be8e3e0
git_last_commit_date: 2026-04-28 08:39:44 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for systemPipeR in R Universe.
Package 30/30HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UMI4Cats 1.22.0  (landing page)
Mireia Ramos-Rodriguez
git_last_commit: bc64602
git_last_commit_date: 2026-04-28 08:53:22 -0400
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for UMI4Cats in R Universe.