Bill Wheeler
| Snapshot Date: 2026-03-25 13:40 -0400 (Wed, 25 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/SUITOR |
| git_branch: devel |
| git_last_commit: c762b8f |
| git_last_commit_date: 2025-10-29 11:17:09 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-26 11:35 -0400 (Thu, 26 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4876 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4574 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2162/2372 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SUITOR 1.13.0 (landing page) Bill Wheeler
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| See other builds for SUITOR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the SUITOR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SUITOR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SUITOR |
| Version: 1.13.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SUITOR |
| StartedAt: 2026-03-25 17:59:57 -0400 (Wed, 25 Mar 2026) |
| EndedAt: 2026-03-25 17:59:58 -0400 (Wed, 25 Mar 2026) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SUITOR
###
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* checking for file ‘SUITOR/DESCRIPTION’ ... OK
* preparing ‘SUITOR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
-----------------------------------
* installing *source* package ‘SUITOR’ ...
** this is package ‘SUITOR’ version ‘1.13.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SUITOR_init.c -o SUITOR_init.o
clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c source.c -o source.o
source.c:166:28: error: unknown type name 'n'
166 | static double * dVec_alloc(n, initFlag, initVal)
| ^
source.c:166:31: error: unknown type name 'initFlag'
166 | static double * dVec_alloc(n, initFlag, initVal)
| ^
source.c:166:41: error: unknown type name 'initVal'
166 | static double * dVec_alloc(n, initFlag, initVal)
| ^
source.c:166:49: error: expected ';' after top level declarator
166 | static double * dVec_alloc(n, initFlag, initVal)
| ^
| ;
source.c:169:1: error: expected identifier or '('
169 | {
| ^
source.c:185:25: error: unknown type name 'n'
185 | static int * iVec_alloc(n, initFlag, initVal)
| ^
source.c:185:28: error: unknown type name 'initFlag'
185 | static int * iVec_alloc(n, initFlag, initVal)
| ^
source.c:185:38: error: unknown type name 'initVal'
185 | static int * iVec_alloc(n, initFlag, initVal)
| ^
source.c:185:46: error: expected ';' after top level declarator
185 | static int * iVec_alloc(n, initFlag, initVal)
| ^
| ;
source.c:186:18: error: redefinition of 'initVal' with a different type: 'int' vs 'double'
186 | int n, initFlag, initVal;
| ^
source.c:168:8: note: previous definition is here
168 | double initVal;
| ^
source.c:187:1: error: expected identifier or '('
187 | {
| ^
source.c:203:26: error: unknown type name 'n'
203 | static char * cVec_alloc(n, initFlag, initVal)
| ^
source.c:203:29: error: unknown type name 'initFlag'
203 | static char * cVec_alloc(n, initFlag, initVal)
| ^
source.c:203:39: error: unknown type name 'initVal'
203 | static char * cVec_alloc(n, initFlag, initVal)
| ^
source.c:203:47: error: expected ';' after top level declarator
203 | static char * cVec_alloc(n, initFlag, initVal)
| ^
| ;
source.c:205:6: error: redefinition of 'initVal' with a different type: 'char' vs 'double'
205 | char initVal;
| ^
source.c:168:8: note: previous definition is here
168 | double initVal;
| ^
source.c:206:1: error: expected identifier or '('
206 | {
| ^
source.c:222:23: error: unknown type name 'v'
222 | static void copy_dVec(v, n, ret)
| ^
source.c:222:26: error: unknown type name 'n'
222 | static void copy_dVec(v, n, ret)
| ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [source.o] Error 1
ERROR: compilation failed for package ‘SUITOR’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpCUpSfo/Rinstb8366cf46f/SUITOR’
-----------------------------------
ERROR: package installation failed