| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-09 11:33 -0400 (Mon, 09 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4508 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3381 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1831/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rnits 1.45.0 (landing page) Dipen P. Sangurdekar
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for Rnits in R Universe. | ||||||||||||||
|
To the developers/maintainers of the Rnits package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rnits.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Rnits |
| Version: 1.45.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rnits |
| StartedAt: 2026-03-08 19:43:06 -0400 (Sun, 08 Mar 2026) |
| EndedAt: 2026-03-08 19:43:24 -0400 (Sun, 08 Mar 2026) |
| EllapsedTime: 18.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rnits
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* checking for file ‘Rnits/DESCRIPTION’ ... OK
* preparing ‘Rnits’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Rnits-vignette.Rnw’ using knitr
Quitting from Rnits-vignette.Rnw:89-114 [loaddata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `open.connection()`:
! cannot open the connection
---
Backtrace:
x
1. \-GEOquery::getGEO("GSE4158", AnnotGPL = FALSE)
2. \-GEOquery:::getAndParseGSEMatrices(...)
3. \-GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO))
4. +-xml2::read_html(url)
5. \-xml2:::read_html.default(url)
6. +-base::suppressWarnings(...)
7. | \-base::withCallingHandlers(...)
8. +-xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options)
9. \-xml2:::read_xml.character(...)
10. \-xml2:::read_xml.connection(...)
11. +-base::open(x, "rb")
12. \-base::open.connection(x, "rb")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Rnits-vignette.Rnw' failed with diagnostics:
cannot open the connection
--- failed re-building ‘Rnits-vignette.Rnw’
SUMMARY: processing the following file failed:
‘Rnits-vignette.Rnw’
Error: Vignette re-building failed.
Execution halted