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This page was generated on 2026-05-07 11:36 -0400 (Thu, 07 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4990
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4723
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1776/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rcpi 1.48.0  (landing page)
Nan Xiao
Snapshot Date: 2026-05-06 13:40 -0400 (Wed, 06 May 2026)
git_url: https://git.bioconductor.org/packages/Rcpi
git_branch: RELEASE_3_23
git_last_commit: 7b08591
git_last_commit_date: 2026-04-28 08:38:50 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
See other builds for Rcpi in R Universe.


CHECK results for Rcpi on kjohnson3

To the developers/maintainers of the Rcpi package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rcpi
Version: 1.48.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
StartedAt: 2026-05-06 22:05:16 -0400 (Wed, 06 May 2026)
EndedAt: 2026-05-06 22:06:06 -0400 (Wed, 06 May 2026)
EllapsedTime: 50.7 seconds
RetCode: 0
Status:   OK  
CheckDir: Rcpi.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Rcpi_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/Rcpi.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-05-07 02:05:16 UTC
* using option ‘--no-vignettes’
* checking for file ‘Rcpi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rcpi’ version ‘1.48.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Rcpi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

Rcpi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL Rcpi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘Rcpi’ ...
** this is package ‘Rcpi’ version ‘1.48.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)

Tests output

Rcpi.Rcheck/tests/testthat.Rout


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(Rcpi)

> 
> test_check("Rcpi")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 22 ]
> 
> proc.time()
   user  system elapsed 
  2.483   0.229   2.250 

Example timings

Rcpi.Rcheck/Rcpi-Ex.timings

nameusersystemelapsed
AA2DACOR0.0010.0010.001
AA3DMoRSE0.0000.0010.000
AAACF0.0010.0000.001
AABLOSUM1000.0000.0010.001
AABLOSUM450.0000.0000.001
AABLOSUM500.0010.0010.000
AABLOSUM62000
AABLOSUM80000
AABurden0.0000.0010.001
AACPSA0.0010.0000.001
AAConn0.0000.0010.001
AAConst0.0000.0000.001
AADescAll000
AAEdgeAdj000
AAEigIdx0.0000.0000.001
AAFGC0.0000.0000.001
AAGETAWAY0.0010.0010.000
AAGeom000
AAInfo0.0000.0000.001
AAMOE2D000
AAMOE3D0.0010.0000.000
AAMetaInfo0.0000.0000.001
AAMolProp0.0000.0010.001
AAPAM1200.0000.0000.001
AAPAM2500.0000.0010.001
AAPAM30000
AAPAM400.0000.0010.000
AAPAM700.0010.0000.007
AARDF000
AARandic000
AATopo0.0000.0010.000
AATopoChg000
AAWHIM0.0010.0000.001
AAWalk0.0000.0010.001
AAindex0.0000.0000.001
OptAA3d000
acc0.0080.0020.011
calcDrugFPSim000
calcDrugMCSSim0.0010.0010.003
calcParProtGOSim000
calcParProtSeqSim0.0020.0010.004
calcTwoProtGOSim000
calcTwoProtSeqSim0.0010.0000.001
checkProt0.0000.0000.001
convMolFormat0.0000.0000.001
extractDrugAIO000
extractDrugALOGP000
extractDrugAminoAcidCount0.0000.0000.001
extractDrugApol0.0000.0000.001
extractDrugAromaticAtomsCount0.0010.0000.000
extractDrugAromaticBondsCount000
extractDrugAtomCount0.0000.0000.001
extractDrugAutocorrelationCharge0.0010.0000.000
extractDrugAutocorrelationMass000
extractDrugAutocorrelationPolarizability0.0000.0000.001
extractDrugBCUT0.0010.0000.000
extractDrugBPol0.0000.0000.001
extractDrugBondCount000
extractDrugCPSA0.0010.0000.001
extractDrugCarbonTypes000
extractDrugChiChain0.0000.0010.000
extractDrugChiCluster0.0010.0000.001
extractDrugChiPath000
extractDrugChiPathCluster000
extractDrugDescOB0.0020.0000.003
extractDrugECI0.0000.0000.001
extractDrugEstate0.0000.0000.001
extractDrugEstateComplete0.0000.0000.001
extractDrugExtended000
extractDrugExtendedComplete000
extractDrugFMF0.0010.0000.000
extractDrugFragmentComplexity0.0000.0010.000
extractDrugGraph0.0000.0000.001
extractDrugGraphComplete000
extractDrugGravitationalIndex0.0000.0000.001
extractDrugHBondAcceptorCount000
extractDrugHBondDonorCount000
extractDrugHybridization0.0010.0000.001
extractDrugHybridizationComplete0.0000.0010.000
extractDrugHybridizationRatio0.0000.0000.001
extractDrugIPMolecularLearning0.0010.0000.000
extractDrugKR0.0000.0010.000
extractDrugKRComplete0.0000.0000.001
extractDrugKappaShapeIndices0.0010.0000.000
extractDrugKierHallSmarts000
extractDrugLargestChain0.0000.0000.001
extractDrugLargestPiSystem000
extractDrugLengthOverBreadth0.0000.0010.000
extractDrugLongestAliphaticChain0.0000.0000.001
extractDrugMACCS000
extractDrugMACCSComplete0.0010.0000.001
extractDrugMDE000
extractDrugMannholdLogP0.0000.0000.001
extractDrugMomentOfInertia000
extractDrugOBFP20.0030.0010.005
extractDrugOBFP30.0010.0000.002
extractDrugOBFP40.0370.0010.038
extractDrugOBMACCS0.0020.0010.002
extractDrugPetitjeanNumber000
extractDrugPetitjeanShapeIndex0.0010.0000.000
extractDrugPubChem000
extractDrugPubChemComplete0.0000.0000.001
extractDrugRotatableBondsCount000
extractDrugRuleOfFive0.0000.0000.001
extractDrugShortestPath000
extractDrugShortestPathComplete0.0000.0010.001
extractDrugStandard0.0010.0000.000
extractDrugStandardComplete0.0000.0000.001
extractDrugTPSA000
extractDrugVABC0.0000.0010.001
extractDrugVAdjMa000
extractDrugWHIM0.0000.0000.001
extractDrugWeight000
extractDrugWeightedPath0.0010.0000.001
extractDrugWienerNumbers000
extractDrugXLogP000
extractDrugZagrebIndex000
extractPCMBLOSUM0.0030.0010.004
extractPCMDescScales0.0040.0010.004
extractPCMFAScales0.0100.0020.011
extractPCMMDSScales0.0030.0010.003
extractPCMPropScales0.0040.0000.004
extractPCMScales0.0050.0010.007
extractProtAAC0.0000.0000.001
extractProtAPAAC0.2520.0050.261
extractProtCTDC0.0010.0000.002
extractProtCTDD0.0010.0010.002
extractProtCTDT0.0010.0000.001
extractProtCTriad0.0280.0030.031
extractProtDC0.0010.0010.002
extractProtGeary0.0380.0020.040
extractProtMoran0.0380.0050.044
extractProtMoreauBroto0.0330.0040.036
extractProtPAAC0.1200.0020.124
extractProtPSSM0.0000.0000.001
extractProtPSSMAcc000
extractProtPSSMFeature0.0000.0010.001
extractProtQSO0.2110.0020.213
extractProtSOCN0.2030.0020.204
extractProtTC0.0100.0320.042
getCPI0.0010.0010.001
getDrug000
getFASTAFromKEGG000
getFASTAFromUniProt000
getMolFromCAS000
getMolFromChEMBL000
getMolFromDrugBank0.0000.0000.001
getMolFromKEGG000
getMolFromPubChem000
getPDBFromRCSBPDB0.0000.0000.001
getPPI0.0010.0000.001
getProt0.0000.0010.000
getSeqFromKEGG000
getSeqFromRCSBPDB000
getSeqFromUniProt000
getSmiFromChEMBL000
getSmiFromDrugBank000
getSmiFromKEGG000
getSmiFromPubChem000
readFASTA0.0010.0000.000
readMolFromSDF0.0010.0000.001
readMolFromSmi000
readPDB0.2380.0010.240
searchDrug0.0000.0010.001
segProt0.0010.0000.001