| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-10 11:33 -0400 (Tue, 10 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4522 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1811/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RLassoCox 1.19.0 (landing page) Wei Liu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| See other builds for RLassoCox in R Universe. | ||||||||||||||
|
To the developers/maintainers of the RLassoCox package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RLassoCox.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RLassoCox |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RLassoCox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RLassoCox_1.19.0.tar.gz |
| StartedAt: 2026-03-09 16:33:09 -0400 (Mon, 09 Mar 2026) |
| EndedAt: 2026-03-09 16:34:34 -0400 (Mon, 09 Mar 2026) |
| EllapsedTime: 84.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RLassoCox.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RLassoCox.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RLassoCox_1.19.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/RLassoCox.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-09 20:33:09 UTC
* using option ‘--no-vignettes’
* checking for file ‘RLassoCox/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RLassoCox’ version ‘1.19.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RLassoCox’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
RLassoCox-package 15.948 5.053 21.046
predict.cvRLassoCox 9.679 2.655 12.370
cvRLassoCox 8.755 2.586 11.350
predict.RLassoCox 7.125 2.552 9.722
RLassoCox 7.049 2.391 9.463
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
RLassoCox.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RLassoCox ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘RLassoCox’ ... ** this is package ‘RLassoCox’ version ‘1.19.0’ ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RLassoCox)
RLassoCox.Rcheck/RLassoCox-Ex.timings
| name | user | system | elapsed | |
| RLassoCox-package | 15.948 | 5.053 | 21.046 | |
| RLassoCox | 7.049 | 2.391 | 9.463 | |
| cvRLassoCox | 8.755 | 2.586 | 11.350 | |
| dGMMirGraph | 0.011 | 0.001 | 0.013 | |
| mRNA_matrix | 0.005 | 0.000 | 0.006 | |
| predict.RLassoCox | 7.125 | 2.552 | 9.722 | |
| predict.cvRLassoCox | 9.679 | 2.655 | 12.370 | |
| survData | 0.000 | 0.000 | 0.001 | |