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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4013 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1360/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsBackendSql 1.11.1 (landing page) Johannes Rainer
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the MsBackendSql package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendSql.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MsBackendSql |
| Version: 1.11.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendSql |
| StartedAt: 2025-11-12 16:47:08 -0500 (Wed, 12 Nov 2025) |
| EndedAt: 2025-11-12 16:47:16 -0500 (Wed, 12 Nov 2025) |
| EllapsedTime: 8.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendSql
###
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* checking for file ‘MsBackendSql/DESCRIPTION’ ... OK
* preparing ‘MsBackendSql’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MsBackendSql.Rmd’ using rmarkdown
Quitting from MsBackendSql.Rmd:66-77 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
---
Backtrace:
▆
1. ├─MsBackendSql::createMsBackendSqlDatabase(con, fls)
2. │ ├─MsBackendSql:::.insert_data(...)
3. │ │ └─ProtGenerics::backendInitialize(backend, x[1L])
4. │ └─Spectra::MsBackendMzR()
5. │ └─base::stop(...)
6. └─base::.handleSimpleError(...)
7. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MsBackendSql.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'backendInitialize': The use of 'MsBackendMzR' requires package 'mzR'. Please install with 'BiocInstaller::install("mzR")'
--- failed re-building ‘MsBackendSql.Rmd’
SUMMARY: processing the following file failed:
‘MsBackendSql.Rmd’
Error: Vignette re-building failed.
Execution halted