Shuangbin Xu
| Snapshot Date: 2025-11-13 13:40 -0500 (Thu, 13 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/MicrobiotaProcess |
| git_branch: devel |
| git_last_commit: 9b6279e |
| git_last_commit_date: 2025-10-29 10:58:25 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-11-14 11:36 -0500 (Fri, 14 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4825 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4547 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1280/2325 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MicrobiotaProcess 1.23.0 (landing page) Shuangbin Xu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the MicrobiotaProcess package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MicrobiotaProcess.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MicrobiotaProcess |
| Version: 1.23.0 |
| Command: rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MicrobiotaProcess_1.23.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MicrobiotaProcess.buildbin-libdir |
| StartedAt: 2025-11-13 23:45:30 -0500 (Thu, 13 Nov 2025) |
| EndedAt: 2025-11-13 23:45:58 -0500 (Thu, 13 Nov 2025) |
| EllapsedTime: 28.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MicrobiotaProcess_1.23.0.tgz |
| PackageFileSize: 5.78 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MicrobiotaProcess.buildbin-libdir && mkdir MicrobiotaProcess.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MicrobiotaProcess_1.23.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MicrobiotaProcess.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MicrobiotaProcess.buildbin-libdir MicrobiotaProcess_1.23.0.tar.gz' >>>>>>> * installing *source* package ‘MicrobiotaProcess’ ... ** this is package ‘MicrobiotaProcess’ version ‘1.23.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘taxonomy<-’ with signature ‘x="MPSE",value="taxonomyTable"’: no definition for class “taxonomyTable” Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘MicrobiotaProcess’ in method for ‘get_alltaxadf’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_taxadf’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_alphaindex’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_NRI_NTI’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_rarecurve’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_upset’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘get_vennlist’ with signature ‘"phyloseq"’: no definition for class “phyloseq” in method for ‘drop_taxa’ with signature ‘"phyloseq"’: no definition for class “phyloseq” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MicrobiotaProcess)