| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-01-06 11:35 -0500 (Tue, 06 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-12-22 r89219) -- "Unsuffered Consequences" | 4815 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1285/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MicrobiomeProfiler 1.17.1 (landing page) Guangchuang Yu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | OK | |||||||||
|
To the developers/maintainers of the MicrobiomeProfiler package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MicrobiomeProfiler.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MicrobiomeProfiler |
| Version: 1.17.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MicrobiomeProfiler.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MicrobiomeProfiler_1.17.1.tar.gz |
| StartedAt: 2026-01-05 20:54:48 -0500 (Mon, 05 Jan 2026) |
| EndedAt: 2026-01-05 20:54:52 -0500 (Mon, 05 Jan 2026) |
| EllapsedTime: 4.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: MicrobiomeProfiler.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MicrobiomeProfiler.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MicrobiomeProfiler_1.17.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/MicrobiomeProfiler.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MicrobiomeProfiler/DESCRIPTION’ ... OK
* this is package ‘MicrobiomeProfiler’ version ‘1.17.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MicrobiomeProfiler’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/MicrobiomeProfiler.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/MicrobiomeProfiler.Rcheck/00check.log’
for details.
MicrobiomeProfiler.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MicrobiomeProfiler ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’ * installing *source* package ‘MicrobiomeProfiler’ ... ** this is package ‘MicrobiomeProfiler’ version ‘1.17.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Error in loadNamespace(name) : there is no package called ‘clusterProfiler’ Error: unable to load R code in package ‘MicrobiomeProfiler’ Execution halted ERROR: lazy loading failed for package ‘MicrobiomeProfiler’ * removing ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/MicrobiomeProfiler’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/MicrobiomeProfiler’