| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-05-23 11:32 -0400 (Sat, 23 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4995 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1315/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MetMashR 1.6.0 (landing page) Gavin Rhys Lloyd
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for MetMashR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the MetMashR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetMashR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: MetMashR |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR |
| StartedAt: 2026-05-22 18:51:11 -0400 (Fri, 22 May 2026) |
| EndedAt: 2026-05-22 18:55:36 -0400 (Fri, 22 May 2026) |
| EllapsedTime: 265.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetMashR
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* checking for file ‘MetMashR/DESCRIPTION’ ... OK
* preparing ‘MetMashR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘Extending_MetMashR.Rmd’ using rmarkdown
--- finished re-building ‘Extending_MetMashR.Rmd’
--- re-building ‘annotate_mixtures.Rmd’ using rmarkdown
--- finished re-building ‘annotate_mixtures.Rmd’
--- re-building ‘exploring_mtox.Rmd’ using rmarkdown
--- finished re-building ‘exploring_mtox.Rmd’
--- re-building ‘using_MetMashR.Rmd’ using rmarkdown
Quitting from using_MetMashR.Rmd:438-453 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(x) <- value`:
! 'names' attribute [2] must be the same length as the vector [1]
---
Backtrace:
▆
1. ├─struct::model_apply(FI, TF)
2. └─MetMashR::model_apply(FI, TF)
3. └─MetMashR (local) .local(M, D, ...)
4. └─base::`colnames<-`(`*tmp*`, value = `*vtmp*`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'using_MetMashR.Rmd' failed with diagnostics:
'names' attribute [2] must be the same length as the vector [1]
--- failed re-building ‘using_MetMashR.Rmd’
SUMMARY: processing the following file failed:
‘using_MetMashR.Rmd’
Error: Vignette re-building failed.
Execution halted