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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL Harman
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* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘Harman’ ...
** this is package ‘Harman’ version ‘1.39.0’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:
CSelectRandom.h:939: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
  939 | #pragma omp critical
      | 
Harman.cpp:3057: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3057 | #pragma omp parallel for  shared(ptr_Expt, pcascores, abort_bool) ordered schedule(static,1)
      | 
Harman.cpp:3064: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3064 |         #pragma omp critical
      | 
Harman.cpp:3124: warning: ignoring ‘#pragma omp ordered’ [-Wunknown-pragmas]
 3124 |             #pragma omp ordered
      | 
Harman.cpp:3145: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
 3145 |             #pragma omp critical
      | 
Harman.cpp:3148: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3148 |                 #pragma omp flush (abort_bool)
      | 
Harman.cpp:3151: warning: ignoring ‘#pragma omp flush’ [-Wunknown-pragmas]
 3151 |                 #pragma omp flush (abort_bool)
      | 
Harman.cpp: In function ‘SEXPREC* HarmanMain(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
Harman.cpp:3008:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 3008 |   else
      |   ^~~~
Harman.cpp:3022:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 3022 |     std::vector<unsigned int>    tr_std_tmp     = Rcpp::as<std::vector<unsigned int> >(tr) ;
      |     ^~~
CSelectRandom.h: In instantiation of ‘std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long unsigned int]’:
Harman.cpp:1764:79:   required from here
CSelectRandom.h:943:48: warning: comparison of integer expressions of different signedness: ‘long long int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  943 |                                 while (currval < howManyIN)
      |                                        ~~~~~~~~^~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib -o Harman.so Harman.o
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-Harman/00new/Harman/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harman)