Back to Build/check report for BioC 3.23:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 932/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSVA 2.5.6  (landing page)
Robert Castelo
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/GSVA
git_branch: devel
git_last_commit: 13f832d
git_last_commit_date: 2025-11-12 08:34:40 -0500 (Wed, 12 Nov 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped

BUILD results for GSVA on kjohnson3

To the developers/maintainers of the GSVA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSVA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GSVA
Version: 2.5.6
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA
StartedAt: 2025-11-12 16:26:42 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 16:26:43 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 1.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA
###
##############################################################################
##############################################################################


* checking for file ‘GSVA/DESCRIPTION’ ... OK
* preparing ‘GSVA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
      -----------------------------------
ERROR: dependency ‘HDF5Array’ is not available for package ‘GSVA’
Perhaps try a variation of:
install.packages('HDF5Array')
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/Rtmp76yi9O/Rinstb37f595252e2/GSVA’
      -----------------------------------
ERROR: package installation failed