Multiple platform build/check report for BioC 3.23 - BUILD results for GOfuncR on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 alpha (2026-04-05 r89794)	4957
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 alpha (2026-04-08 r89818)	4686
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4627
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for GOfuncR on kunpeng2

To the developers/maintainers of the GOfuncR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOfuncR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: GOfuncR

Version: 1.31.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOfuncR

StartedAt: 2026-04-16 23:56:13 -0000 (Thu, 16 Apr 2026)

EndedAt: 2026-04-16 23:58:41 -0000 (Thu, 16 Apr 2026)

EllapsedTime: 148.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GOfuncR
###
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* checking for file ‘GOfuncR/DESCRIPTION’ ... OK
* preparing ‘GOfuncR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GOfuncR.Rmd’ using rmarkdown
Failed with error:  'package 'GenomicFeatures' could not be loaded'

Quitting from GOfuncR.Rmd:110-114 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `load_db()`:
! database 'Homo.sapiens' is not installed. Please install it from bioconductor:
if (!requireNamespace('BiocManager', quietly = TRUE))
	install.packages('BiocManager')
BiocManager::install('Homo.sapiens')
---
Backtrace:
    ▆
 1. └─GOfuncR::go_enrich(input_hyper, n_randset = 100)
 2.   └─GOfuncR:::eval_db_input(...)
 3.     └─GOfuncR:::load_db(anno_db)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GOfuncR.Rmd' failed with diagnostics:
database 'Homo.sapiens' is not installed. Please install it from bioconductor:
if (!requireNamespace('BiocManager', quietly = TRUE))
	install.packages('BiocManager')
BiocManager::install('Homo.sapiens')
--- failed re-building ‘GOfuncR.Rmd’

SUMMARY: processing the following file failed:
  ‘GOfuncR.Rmd’

Error: Vignette re-building failed.
Execution halted