| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-24 11:34 -0400 (Tue, 24 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4869 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4567 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 869/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GEOmetadb 1.73.1 (landing page) Jack Zhu
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for GEOmetadb in R Universe. | ||||||||||||||
|
To the developers/maintainers of the GEOmetadb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GEOmetadb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: GEOmetadb |
| Version: 1.73.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb |
| StartedAt: 2026-03-23 17:51:42 -0400 (Mon, 23 Mar 2026) |
| EndedAt: 2026-03-23 17:51:58 -0400 (Mon, 23 Mar 2026) |
| EllapsedTime: 16.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GEOmetadb
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* checking for file ‘GEOmetadb/DESCRIPTION’ ... OK
* preparing ‘GEOmetadb’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘GEOmetadb.Rmd’ using rmarkdown
trying URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz'
Content type 'application/x-gzip' length 20889492 bytes (19.9 MB)
==================================================
downloaded 19.9 MB
Quitting from GEOmetadb.Rmd:283-288 [unnamed-chunk-20]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'tbl' applied to an object of class "character"
---
Backtrace:
▆
1. └─dplyr::tbl(demo_sqlfile)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'GEOmetadb.Rmd' failed with diagnostics:
no applicable method for 'tbl' applied to an object of class "character"
--- failed re-building ‘GEOmetadb.Rmd’
SUMMARY: processing the following file failed:
‘GEOmetadb.Rmd’
Error: Vignette re-building failed.
Execution halted