Mike Jiang
| Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026) |
| git_url: https://git.bioconductor.org/packages/CytoML |
| git_branch: RELEASE_3_23 |
| git_last_commit: 14a81f1 |
| git_last_commit_date: 2026-04-28 08:43:46 -0400 (Tue, 28 Apr 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:34 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 519/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CytoML 2.24.0 (landing page) Mike Jiang
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for CytoML in R Universe. | ||||||||||||||
|
To the developers/maintainers of the CytoML package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CytoML.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CytoML |
| Version: 2.24.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML |
| StartedAt: 2026-05-07 15:50:01 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 15:50:22 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 21.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML ### ############################################################################## ############################################################################## * checking for file ‘CytoML/DESCRIPTION’ ... OK * preparing ‘CytoML’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘HowToExportGatingSet.Rmd’ using rmarkdown Error: processing vignette 'HowToExportGatingSet.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘HowToExportGatingSet.Rmd’ --- re-building ‘cytobank2GatingSet.Rmd’ using rmarkdown Error: processing vignette 'cytobank2GatingSet.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘cytobank2GatingSet.Rmd’ --- re-building ‘flowjo_to_gatingset.Rmd’ using rmarkdown Error: processing vignette 'flowjo_to_gatingset.Rmd' failed with diagnostics: subscript out of bounds Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found Error in eval(x, envir = envir) : object 'is_local' not found --- failed re-building ‘flowjo_to_gatingset.Rmd’ SUMMARY: processing the following files failed: ‘HowToExportGatingSet.Rmd’ ‘cytobank2GatingSet.Rmd’ ‘flowjo_to_gatingset.Rmd’ Error: Vignette re-building failed. Execution halted