Tobias Depke
| Snapshot Date: 2026-03-05 13:40 -0500 (Thu, 05 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/CluMSID |
| git_branch: devel |
| git_last_commit: 4f5bb4a |
| git_last_commit_date: 2025-10-29 10:49:24 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-06 11:35 -0500 (Fri, 06 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4891 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4593 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 381/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CluMSID 1.27.0 (landing page) Tobias Depke
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for CluMSID in R Universe. | ||||||||||||||
|
To the developers/maintainers of the CluMSID package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CluMSID.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CluMSID |
| Version: 1.27.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID |
| StartedAt: 2026-03-05 15:58:22 -0500 (Thu, 05 Mar 2026) |
| EndedAt: 2026-03-05 15:59:54 -0500 (Thu, 05 Mar 2026) |
| EllapsedTime: 92.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
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* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
2026-03-05 15:58:47.437 R[2797:98472665] XType: Using static font registry.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’
--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown
Quitting from CluMSID_GC-EI-MS.Rmd:97-103 [packages]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'metaMS'
---
Backtrace:
▆
1. └─base::library(metaMS)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
there is no package called 'metaMS'
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’
--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID MTBLS Tutorial", and the latter is "Using CluMSID with a Publicly Available MetaboLights Data Set". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_MTBLS.Rmd’
--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID LowRes Tutorial", and the latter is "Clustering Mass Spectra from Low Resolution LC-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_lowres-LC-MSMS.Rmd’
--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID Tutorial", and the latter is "CluMSID --- Clustering of MS^2^ Spectra for Metabolite Identification". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘CluMSID_GC-EI-MS.Rmd’
Error: Vignette re-building failed.
Execution halted