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This page was generated on 2025-11-13 11:32 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4013
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Package 66/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ANCOMBC 2.13.0  (landing page)
Huang Lin
Snapshot Date: 2025-11-12 13:40 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/ANCOMBC
git_branch: devel
git_last_commit: c173b0e
git_last_commit_date: 2025-10-29 11:02:01 -0500 (Wed, 29 Oct 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for ANCOMBC on kjohnson3

To the developers/maintainers of the ANCOMBC package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ANCOMBC.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ANCOMBC
Version: 2.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC
StartedAt: 2025-11-12 15:47:59 -0500 (Wed, 12 Nov 2025)
EndedAt: 2025-11-12 15:48:20 -0500 (Wed, 12 Nov 2025)
EllapsedTime: 21.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ANCOMBC
###
##############################################################################
##############################################################################


* checking for file ‘ANCOMBC/DESCRIPTION’ ... OK
* preparing ‘ANCOMBC’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to process help pages)
Loading required namespace: ANCOMBC
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘ANCOM.Rmd’ using rmarkdown

Quitting from ANCOM.Rmd:71-107 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'microbiome'
---
Backtrace:
    ▆
 1. └─utils::data(atlas1006, package = "microbiome")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ANCOM.Rmd' failed with diagnostics:
there is no package called 'microbiome'
--- failed re-building ‘ANCOM.Rmd’

--- re-building ‘ANCOMBC.Rmd’ using rmarkdown

Quitting from ANCOMBC.Rmd:72-108 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'microbiome'
---
Backtrace:
    ▆
 1. └─utils::data(atlas1006, package = "microbiome")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ANCOMBC.Rmd' failed with diagnostics:
there is no package called 'microbiome'
--- failed re-building ‘ANCOMBC.Rmd’

--- re-building ‘ANCOMBC2.Rmd’ using rmarkdown

Quitting from ANCOMBC2.Rmd:395-431 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'microbiome'
---
Backtrace:
    ▆
 1. └─utils::data(atlas1006, package = "microbiome")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ANCOMBC2.Rmd' failed with diagnostics:
there is no package called 'microbiome'
--- failed re-building ‘ANCOMBC2.Rmd’

--- re-building ‘SECOM.Rmd’ using rmarkdown

Quitting from SECOM.Rmd:65-101 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'microbiome'
---
Backtrace:
    ▆
 1. └─utils::data(atlas1006, package = "microbiome")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SECOM.Rmd' failed with diagnostics:
there is no package called 'microbiome'
--- failed re-building ‘SECOM.Rmd’

--- re-building ‘data_sanity_check.Rmd’ using rmarkdown

Quitting from data_sanity_check.Rmd:52-56 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `find.package()`:
! there is no package called 'microbiome'
---
Backtrace:
    ▆
 1. └─utils::data(atlas1006, package = "microbiome")
 2.   └─base::find.package(package, lib.loc, verbose = verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data_sanity_check.Rmd' failed with diagnostics:
there is no package called 'microbiome'
--- failed re-building ‘data_sanity_check.Rmd’

SUMMARY: processing the following files failed:
  ‘ANCOM.Rmd’ ‘ANCOMBC.Rmd’ ‘ANCOMBC2.Rmd’ ‘SECOM.Rmd’
  ‘data_sanity_check.Rmd’

Error: Vignette re-building failed.
Execution halted