| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 38/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AHMassBank 1.11.0 (landing page) Johannes Rainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for AHMassBank in R Universe. | ||||||||||||||
|
To the developers/maintainers of the AHMassBank package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AHMassBank.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AHMassBank |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AHMassBank |
| StartedAt: 2026-03-06 15:38:09 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 15:38:39 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 30.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AHMassBank
###
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* checking for file ‘AHMassBank/DESCRIPTION’ ... OK
* preparing ‘AHMassBank’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘creating-MassBank-CompDbs.Rmd’ using rmarkdown
Quitting from creating-MassBank-CompDbs.Rmd:56-59 [load-ensdb]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
name: AH107048
title: MassBank CompDb for release 2021.03
reason: require("CompoundDb") failed: use BiocManager::install() to install package?
---
Backtrace:
▆
1. ├─qr[[1]]
2. └─qr[[1]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
4. └─AnnotationHub:::.Hub_get1(...)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
9. └─base::tryCatch(...)
10. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'creating-MassBank-CompDbs.Rmd' failed with diagnostics:
failed to load resource
name: AH107048
title: MassBank CompDb for release 2021.03
reason: require("CompoundDb") failed: use BiocManager::install() to install package?
--- failed re-building ‘creating-MassBank-CompDbs.Rmd’
SUMMARY: processing the following file failed:
‘creating-MassBank-CompDbs.Rmd’
Error: Vignette re-building failed.
Execution halted