| Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-09-02 16:30 -0400 (Tue, 02 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4825 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4615 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 7/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| cytofWorkflow 1.33.0 (landing page) Mark D. Robinson
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | |||||||||
|
To the developers/maintainers of the cytofWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cytofWorkflow |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow |
| StartedAt: 2025-09-02 13:04:15 -0400 (Tue, 02 Sep 2025) |
| EndedAt: 2025-09-02 13:08:06 -0400 (Tue, 02 Sep 2025) |
| EllapsedTime: 231.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
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* checking for file ‘cytofWorkflow/DESCRIPTION’ ... OK
* preparing ‘cytofWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cytofWorkflow.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_metadata.xlsx'
Content type 'application/octet-stream' length 56676 bytes (55 KB)
==================================================
downloaded 55 KB
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_panel_v3.xlsx'
Content type 'application/octet-stream' length 6423 bytes
==================================================
downloaded 6423 bytes
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_cluster_merging1.xlsx'
Content type 'application/octet-stream' length 39596 bytes (38 KB)
==================================================
downloaded 38 KB
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_cluster_merging2_v3.xlsx'
Quitting from cytofWorkflow.Rmd:508-523 [cluster-merging2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://zenodo.org/records/10039274/files/PBMC8_cluster_merging2_v3.xlsx'
---
Backtrace:
▆
1. └─utils::download.file(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'cytofWorkflow.Rmd' failed with diagnostics:
cannot open URL 'https://zenodo.org/records/10039274/files/PBMC8_cluster_merging2_v3.xlsx'
--- failed re-building ‘cytofWorkflow.Rmd’
SUMMARY: processing the following file failed:
‘cytofWorkflow.Rmd’
Error: Vignette re-building failed.
Execution halted