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This page was generated on 2025-11-06 15:41 -0500 (Thu, 06 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 93/435HostnameOS / ArchINSTALLBUILDCHECK
depmap 1.24.0  (landing page)
Laurent Gatto
Snapshot Date: 2025-11-06 07:30 -0500 (Thu, 06 Nov 2025)
git_url: https://git.bioconductor.org/packages/depmap
git_branch: RELEASE_3_22
git_last_commit: fbdcdfa
git_last_commit_date: 2025-10-29 10:01:43 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for depmap on nebbiolo2

To the developers/maintainers of the depmap package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: depmap
Version: 1.24.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap
StartedAt: 2025-11-06 11:14:47 -0500 (Thu, 06 Nov 2025)
EndedAt: 2025-11-06 11:22:37 -0500 (Thu, 06 Nov 2025)
EllapsedTime: 470.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap
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* checking for file ‘depmap/DESCRIPTION’ ... OK
* preparing ‘depmap’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘depmap.Rmd’ using rmarkdown
--- finished re-building ‘depmap.Rmd’

--- re-building ‘using_depmap.Rmd’ using rmarkdown

Quitting from using_depmap.Rmd:117-143 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_depmap.Rmd' failed with diagnostics:
`select()` doesn't handle lists.
--- failed re-building ‘using_depmap.Rmd’

SUMMARY: processing the following file failed:
  ‘using_depmap.Rmd’

Error: Vignette re-building failed.
Execution halted