Back to Long Tests report for BioC 3.22

This page was generated on 2025-09-27 23:55 -0400 (Sat, 27 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4832
lconwaymacOS 12.7.1 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4620
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/29HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-09-27 09:55 -0400 (Sat, 27 Sep 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-09-27 16:01:06 -0400 (Sat, 27 Sep 2025)
EndedAt: 2025-09-27 16:05:07 -0400 (Sat, 27 Sep 2025)
EllapsedTime: 241.2 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-09-27 16:01:42.817][biodb::testContext]
biodb.INFO [2025-09-27 16:01:42.819][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-27 16:01:42.820][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-09-27 16:01:42.821][biodb::testContext] ********************************************************************************
biodb.INFO [2025-09-27 16:01:42.822][biodb::testContext]
biodb.INFO [2025-09-27 16:01:42.828][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.2.
biodb.DEBUG[2025-09-27 16:01:42.830][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-09-27 16:01:42.837][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-27 16:01:42.838][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-09-27 16:01:42.839][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.842][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-09-27 16:01:42.860][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.863][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-09-27 16:01:42.864][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.876][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-09-27 16:01:42.877][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-09-27 16:01:42.878][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-09-27 16:01:42.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.881][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-09-27 16:01:42.882][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-09-27 16:01:42.883][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.886][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-09-27 16:01:42.887][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-09-27 16:01:42.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.891][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-09-27 16:01:42.892][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-09-27 16:01:42.892][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-09-27 16:01:42.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.896][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-09-27 16:01:42.897][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.900][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-09-27 16:01:42.901][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-09-27 16:01:42.902][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-09-27 16:01:42.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.905][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-09-27 16:01:42.906][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-09-27 16:01:42.907][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-09-27 16:01:42.908][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-09-27 16:01:42.909][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-09-27 16:01:42.910][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-09-27 16:01:42.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.913][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-09-27 16:01:42.914][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-09-27 16:01:42.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.918][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-09-27 16:01:42.918][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-09-27 16:01:42.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.922][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-09-27 16:01:42.923][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-09-27 16:01:42.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.926][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-09-27 16:01:42.927][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-09-27 16:01:42.928][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-09-27 16:01:42.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.931][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-09-27 16:01:42.932][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-09-27 16:01:42.937][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-09-27 16:01:42.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.940][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-09-27 16:01:42.941][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-09-27 16:01:42.942][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-09-27 16:01:42.943][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:42.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:42.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:42.948][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-09-27 16:01:42.978][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:42.993][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-09-27 16:01:42.994][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:42.995][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-27 16:01:42.995][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:42.996][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-27 16:01:42.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:42.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-27 16:01:42.999][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-27 16:01:43.000][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-27 16:01:43.001][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.002][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-09-27 16:01:43.003][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-27 16:01:43.004][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.005][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.006][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-27 16:01:43.006][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-27 16:01:43.006][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-27 16:01:43.006][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-27 16:01:43.006][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-27 16:01:43.007][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-27 16:01:43.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.008][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.009][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-27 16:01:43.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.012][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.013][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-27 16:01:43.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-27 16:01:43.015][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.016][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.017][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-09-27 16:01:43.019][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.020][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-09-27 16:01:43.021][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.022][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-27 16:01:43.023][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.024][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.025][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.026][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.027][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-27 16:01:43.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-27 16:01:43.029][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.029][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-09-27 16:01:43.030][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-27 16:01:43.031][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.032][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.033][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-27 16:01:43.033][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-27 16:01:43.033][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-27 16:01:43.033][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-09-27 16:01:43.033][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-09-27 16:01:43.034][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-27 16:01:43.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.037][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-27 16:01:43.038][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.039][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.039][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.040][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.041][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-27 16:01:43.042][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-27 16:01:43.043][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.044][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.045][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-09-27 16:01:43.047][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.048][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-09-27 16:01:43.049][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.050][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-27 16:01:43.051][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.052][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.052][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.053][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.054][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-09-27 16:01:43.055][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-27 16:01:43.056][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.057][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-09-27 16:01:43.058][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-27 16:01:43.059][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.060][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.061][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-27 16:01:43.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-27 16:01:43.065][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.068][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.069][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-27 16:01:43.070][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-27 16:01:43.071][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.072][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.073][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-09-27 16:01:43.075][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.076][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-09-27 16:01:43.081][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.082][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-27 16:01:43.083][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.084][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.085][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.086][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.087][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-09-27 16:01:43.088][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-27 16:01:43.089][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.090][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-09-27 16:01:43.091][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-27 16:01:43.092][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.092][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.093][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.094][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-09-27 16:01:43.095][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.096][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.097][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-27 16:01:43.098][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.100][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.101][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.101][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-27 16:01:43.102][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-27 16:01:43.103][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.104][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-09-27 16:01:43.108][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-27 16:01:43.109][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.177][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-09-27 16:01:43.181][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-09-27 16:01:43.183][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-09-27 16:01:43.184][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-09-27 16:01:43.185][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-27 16:01:43.187][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-09-27 16:01:43.188][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-09-27 16:01:43.189][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-09-27 16:01:43.190][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-09-27 16:01:43.192][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-09-27 16:01:43.202][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-27 16:01:43.204][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-09-27 16:01:43.206][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-09-27 16:01:43.207][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-09-27 16:01:43.209][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-09-27 16:01:43.210][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-09-27 16:01:43.212][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-09-27 16:01:43.213][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-09-27 16:01:43.215][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-27 16:01:43.216][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-09-27 16:01:43.218][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-09-27 16:01:43.219][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-09-27 16:01:43.221][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-09-27 16:01:43.222][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-09-27 16:01:43.224][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-09-27 16:01:43.225][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-09-27 16:01:43.227][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-09-27 16:01:43.228][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-09-27 16:01:43.230][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-09-27 16:01:43.231][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-09-27 16:01:43.232][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-09-27 16:01:43.234][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-09-27 16:01:43.235][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-09-27 16:01:43.237][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-09-27 16:01:43.238][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-09-27 16:01:43.240][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-09-27 16:01:43.241][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-09-27 16:01:43.243][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-09-27 16:01:43.244][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-09-27 16:01:43.246][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-09-27 16:01:43.247][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-09-27 16:01:43.248][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-09-27 16:01:43.250][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-09-27 16:01:43.251][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-09-27 16:01:43.253][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-09-27 16:01:43.254][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-09-27 16:01:43.256][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-09-27 16:01:43.257][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-09-27 16:01:43.259][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-09-27 16:01:43.260][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-09-27 16:01:43.262][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-09-27 16:01:43.263][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-09-27 16:01:43.264][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-09-27 16:01:43.266][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-09-27 16:01:43.267][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-09-27 16:01:43.269][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-09-27 16:01:43.270][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-09-27 16:01:43.272][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-09-27 16:01:43.273][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-09-27 16:01:43.275][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-09-27 16:01:43.276][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-09-27 16:01:43.277][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-09-27 16:01:43.279][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-09-27 16:01:43.280][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-09-27 16:01:43.282][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-09-27 16:01:43.283][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-09-27 16:01:43.285][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-27 16:01:43.286][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-27 16:01:43.287][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-09-27 16:01:43.289][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-09-27 16:01:43.290][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-09-27 16:01:43.292][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-09-27 16:01:43.293][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-09-27 16:01:43.295][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-09-27 16:01:43.296][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-09-27 16:01:43.297][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-09-27 16:01:43.299][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-09-27 16:01:43.300][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-09-27 16:01:43.302][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-09-27 16:01:43.321][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-09-27 16:01:43.322][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-09-27 16:01:43.324][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-09-27 16:01:43.325][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-09-27 16:01:43.332][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-09-27 16:01:43.334][initialize] This is biodb version 1.17.2.
biodb.DEBUG[2025-09-27 16:01:43.337][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-09-27 16:01:43.338][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.340][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.409][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-09-27 16:01:43.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:43.447][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-09-27 16:01:43.456][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-09-27 16:01:43.458][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.459][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.460][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.461][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-09-27 16:01:43.462][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.462][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.463][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.464][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-09-27 16:01:43.465][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-09-27 16:01:43.466][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-09-27 16:01:43.467][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.468][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-09-27 16:01:43.469][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-09-27 16:01:43.470][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-09-27 16:01:43.471][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-09-27 16:01:43.472][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-09-27 16:01:43.472][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-09-27 16:01:43.472][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-09-27 16:01:43.473][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-09-27 16:01:43.474][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.475][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.475][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-09-27 16:01:43.476][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-09-27 16:01:43.477][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-09-27 16:01:43.478][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-09-27 16:01:43.479][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-09-27 16:01:43.479][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-09-27 16:01:43.480][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-09-27 16:01:43.481][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-09-27 16:01:43.482][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-09-27 16:01:43.483][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-09-27 16:01:43.483][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-09-27 16:01:43.488][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-09-27 16:01:43.490][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-09-27 16:01:43.491][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-09-27 16:01:43.492][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-09-27 16:01:43.494][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-09-27 16:01:43.495][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-09-27 16:01:43.517][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-09-27 16:01:43.532][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-09-27 16:01:43.541][biodb::testThat]
biodb.INFO [2025-09-27 16:01:43.548][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-09-27 16:01:43.549][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:43.549][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:43.553][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-09-27 16:01:43.554][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:43.557][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:43.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:43.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:43.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:43.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:43.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:43.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:43.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:43.588][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.591][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.607][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:43.608][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:43.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.634][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.638][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.641][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.646][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:43.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:43.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.648][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:43.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.656][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.661][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:43.662][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:43.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:43.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.671][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:43.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:43.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:43.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:43.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:43.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.694][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:43.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:43.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:43.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:43.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.702][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:43.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:43.779][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-09-27 16:01:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:43.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:43.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:43.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:43.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:43.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.835][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.918][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.919][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.920][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:43.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.945][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:43.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.967][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.970][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:43.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:43.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.994][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.016][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.017][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.019][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.043][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.089][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.096][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.099][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.121][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.122][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.123][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.134][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.145][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.146][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.148][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.172][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.221][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.235][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.241][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.249][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.250][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.252][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.256][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.264][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.269][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.271][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.277][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.284][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.288][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.290][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.294][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.297][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.303][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.318][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-09-27 16:01:44.351][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:44.352][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:44.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:44.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:44.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:44.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:44.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:44.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:44.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:44.363][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.366][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.389][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.400][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.408][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.415][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.423][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:44.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.431][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:44.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.438][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.443][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.446][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.447][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:44.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.453][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.458][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.461][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:44.503][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-09-27 16:01:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:44.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:44.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:44.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.636][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.637][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.639][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.663][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:44.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.685][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.688][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.709][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.712][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.723][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:44.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.740][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.765][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.786][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.789][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.807][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.811][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.812][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.814][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.835][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.836][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.838][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.860][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.861][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.863][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.884][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.885][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.887][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.912][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.915][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.939][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:44.951][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:44.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.953][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.957][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:44.958][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:44.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.960][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.963][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:44.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.966][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:44.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:44.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:44.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.979][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.984][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:44.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.985][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.989][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:44.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.992][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:44.995][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:44.998][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.002][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.003][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.005][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.008][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.015][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.016][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.018][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.022][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-09-27 16:01:45.023][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:45.024][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:45.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:45.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:45.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:45.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:45.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:45.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:45.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:45.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.038][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.046][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.051][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.054][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.062][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.065][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.072][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.077][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.078][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.080][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.085][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.088][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.089][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.095][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.103][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.108][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.109][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.110][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.115][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.116][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.118][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:45.160][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-09-27 16:01:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:45.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:45.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:45.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.270][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.295][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.319][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.344][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.355][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.366][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.367][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.368][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.391][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.397][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.422][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.443][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.444][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.446][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.468][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.469][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.471][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.492][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.495][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.517][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.520][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.533][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.540][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.546][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.551][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.553][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.563][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.569][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.576][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.582][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.586][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.587][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.588][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.592][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.593][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.595][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.602][ef$get] fields variable is a list.
biodb.INFO [2025-09-27 16:01:45.608][biodb::testThat]
biodb.INFO [2025-09-27 16:01:45.609][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-09-27 16:01:45.610][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:45.610][biodb::testThat]
biodb.DEBUG[2025-09-27 16:01:45.612][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-09-27 16:01:45.614][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-09-27 16:01:45.617][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:01:45.624][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-09-27 16:01:45.628][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-09-27 16:01:45.631][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-09-27 16:01:45.632][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:01:45.634][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-09-27 16:01:45.635][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:45.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:45.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:45.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:45.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:45.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:45.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:45.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:45.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.649][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.657][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.662][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.663][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.664][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.672][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.680][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.687][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.692][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.693][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.695][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.700][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.702][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.707][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.710][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.715][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.718][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.724][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.725][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:45.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:45.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:45.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:45.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:45.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:45.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:45.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:45.770][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.773][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.778][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.780][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.785][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.788][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.796][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.803][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.811][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.812][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.816][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.818][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.826][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.831][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.834][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.841][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.846][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.847][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.849][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:45.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:45.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:45.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:45.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:45.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:45.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:45.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:45.890][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.891][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.893][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.898][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.899][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.901][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.906][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.912][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.919][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.924][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.927][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.932][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.933][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.934][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.936][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:45.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.939][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.942][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.943][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.950][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:45.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.954][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.955][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:45.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:45.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.962][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.963][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.965][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:45.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.970][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.971][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:45.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:45.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:46.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:46.036][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-09-27 16:01:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-09-27 16:01:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-09-27 16:01:46.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-09-27 16:01:46.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-27 16:01:46.086][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.087][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-09-27 16:01:46.088][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.089][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:46.091][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.094][ef$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:46.095][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-09-27 16:01:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:46.130][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-09-27 16:01:46.135][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-09-27 16:01:46.154][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:46.160][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-09-27 16:01:46.161][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-27 16:01:46.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:46.205][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:46.209][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:01:46.210][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:01:46.212][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-09-27 16:01:46.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:46.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:46.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.224][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.225][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.232][ef$get] fields variable is a list.
biodb.INFO [2025-09-27 16:01:46.235][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.236][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-09-27 16:01:46.237][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.238][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:46.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:46.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:01:46.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:46.321][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:46.325][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:01:46.326][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-09-27 16:01:46.338][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.339][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-09-27 16:01:46.340][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.341][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:46.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:46.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:46.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:46.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:46.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-09-27 16:01:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-09-27 16:01:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:46.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:46.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-09-27 16:01:46.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:46.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-27 16:01:46.440][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.441][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-09-27 16:01:46.441][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.442][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.450][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.451][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-09-27 16:01:46.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.452][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.458][biodb::testThat]
biodb.INFO [2025-09-27 16:01:46.459][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-09-27 16:01:46.460][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:46.461][biodb::testThat]
biodb.DEBUG[2025-09-27 16:01:46.464][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-09-27 16:01:58.834][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-09-27 16:01:59.198][biodb::testThat]
biodb.INFO [2025-09-27 16:01:59.200][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-09-27 16:01:59.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:59.203][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:59.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.214][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.216][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.220][ef$get] fields variable is a list.
biodb.INFO [2025-09-27 16:01:59.223][biodb::testThat]
biodb.INFO [2025-09-27 16:01:59.225][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-09-27 16:01:59.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:01:59.228][biodb::testThat]
biodb.TRACE[2025-09-27 16:01:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:01:59.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:59.350][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:59.353][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:01:59.354][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-27 16:01:59.434][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:59.437][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:59.440][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:01:59.441][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-09-27 16:01:59.452][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:01:59.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:01:59.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:01:59.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:59.487][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:59.489][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-27 16:01:59.490][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:59.501][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-09-27 16:01:59.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:01:59.545][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:01:59.549][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-09-27 16:01:59.550][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:59.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:59.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:59.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.567][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.577][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:59.577][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:59.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.579][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.584][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:59.585][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:59.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.587][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:59.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:59.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:59.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.595][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:59.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:59.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.602][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:59.608][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:59.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.610][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.611][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:59.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.614][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.621][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.626][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.629][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:59.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:59.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.637][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:59.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:59.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.642][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:59.643][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:59.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.645][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:59.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:59.687][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-09-27 16:01:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:01:59.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:59.710][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:59.712][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-27 16:01:59.713][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:59.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:59.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:59.761][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-09-27 16:01:59.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:01:59.763][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:01:59.766][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-09-27 16:01:59.767][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.768][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:59.770][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:59.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:59.781][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.784][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.789][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:59.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:59.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.792][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:01:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.797][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:59.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:59.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.800][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:01:59.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:01:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:59.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:59.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.808][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:01:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:01:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.815][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:01:59.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.820][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:59.821][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:01:59.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.823][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.824][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:59.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.827][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:01:59.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:01:59.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.840][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.843][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:01:59.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:01:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.848][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:59.849][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:59.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.850][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:01:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:01:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.855][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:59.856][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:59.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.858][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:01:59.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:01:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:01:59.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:59.904][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-09-27 16:01:59.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:01:59.931][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:01:59.934][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:01:59.937][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:01:59.938][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:59.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:01:59.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:01:59.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:01:59.970][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-09-27 16:01:59.971][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:01:59.973][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:01:59.975][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-09-27 16:01:59.976][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:01:59.977][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:01:59.979][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:01:59.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:01:59.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:01:59.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:01:59.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:01:59.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:01:59.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:01:59.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:01:59.990][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.993][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:01:59.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:01:59.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:01:59.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:01:59.998][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:01:59.999][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.001][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.002][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.003][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.005][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.013][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.017][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.018][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.019][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.021][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.029][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.030][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.032][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.037][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.038][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.040][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.041][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.045][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.046][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.048][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.086][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-09-27 16:02:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.115][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-09-27 16:02:00.116][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.117][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.121][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-09-27 16:02:00.122][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.124][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.139][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.144][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.147][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.151][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.153][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.155][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.158][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.162][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.163][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.166][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.167][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.168][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.170][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.174][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.199][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.202][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.203][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.209][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.248][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-09-27 16:02:00.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.277][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-09-27 16:02:00.278][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.279][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.283][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-09-27 16:02:00.284][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.285][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.301][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.306][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.307][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.308][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.312][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.314][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.315][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.316][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.320][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.321][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.322][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.324][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.325][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.328][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.329][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.330][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.332][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.336][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.341][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.342][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.344][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.353][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.354][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.356][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.394][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-09-27 16:02:00.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.423][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-09-27 16:02:00.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.426][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.431][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-09-27 16:02:00.432][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.433][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.434][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.446][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.448][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.453][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.454][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.456][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.461][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.464][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.472][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.480][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.488][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.493][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.496][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.497][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.503][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.512][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.515][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.520][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.523][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.531][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.574][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-09-27 16:02:00.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.578][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.595][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-09-27 16:02:00.596][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.598][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.602][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-09-27 16:02:00.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.604][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.605][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.614][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.617][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.618][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.620][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.625][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.626][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.629][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.633][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.636][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.642][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.644][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.651][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.656][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.657][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.659][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.668][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.671][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.672][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.676][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.677][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.679][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.686][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.691][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.692][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.694][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.702][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.745][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-09-27 16:02:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.766][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-09-27 16:02:00.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.769][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.772][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-09-27 16:02:00.773][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.775][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.787][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.790][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.795][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.798][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.803][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.804][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.806][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.813][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.822][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.823][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.825][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.830][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.831][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.833][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.834][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.836][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.838][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:00.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.844][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:00.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.852][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:00.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:00.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:00.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:00.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.867][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.909][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-09-27 16:02:00.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:00.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:00.931][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-09-27 16:02:00.932][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:00.933][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:00.937][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-09-27 16:02:00.938][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:00.939][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:00.940][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:00.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:00.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:00.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:00.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:00.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:00.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:00.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:00.953][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.955][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.960][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.961][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.963][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:00.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:00.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.968][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.971][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.976][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:00.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:00.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.983][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:00.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.988][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.990][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:00.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.995][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.996][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:00.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:00.998][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:00.999][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.017][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.025][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.030][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.031][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.032][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.074][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-09-27 16:02:01.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.096][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-09-27 16:02:01.097][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.098][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.102][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-09-27 16:02:01.103][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.104][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.105][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.117][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.118][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.119][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.128][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.129][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.131][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.133][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.136][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.139][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.140][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.145][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.147][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.154][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.160][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.162][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.163][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.164][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.166][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.171][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.172][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.174][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.179][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.180][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.181][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.187][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.189][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.240][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-09-27 16:02:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.262][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-09-27 16:02:01.262][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.264][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.268][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-09-27 16:02:01.269][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.270][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.271][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.287][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.290][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.295][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.296][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.297][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.299][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.313][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.318][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.319][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.321][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.327][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.328][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.330][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.332][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.340][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.348][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.356][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.364][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.406][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-09-27 16:02:01.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.429][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-09-27 16:02:01.429][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.431][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.435][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-09-27 16:02:01.440][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.441][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.442][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.454][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.455][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.457][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.464][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.472][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.480][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.488][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.493][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.494][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.496][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.497][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.500][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.501][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.507][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.512][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.515][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.520][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.521][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.523][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.524][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.529][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.531][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.584][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-09-27 16:02:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.626][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-09-27 16:02:01.627][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.629][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.632][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-09-27 16:02:01.633][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.634][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.635][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.648][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.649][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.651][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.657][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.658][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.660][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.665][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.668][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.675][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.677][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.681][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.685][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.686][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.689][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.691][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.695][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.696][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.698][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.703][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.704][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.706][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.715][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.720][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.721][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.723][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.762][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-09-27 16:02:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.789][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-09-27 16:02:01.790][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.791][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.793][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-09-27 16:02:01.794][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.795][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.805][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.809][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.810][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.811][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.819][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.827][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.828][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.833][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.838][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.840][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.841][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:01.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.842][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.843][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.846][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:01.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.854][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:01.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.859][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.861][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.869][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.874][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:01.875][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:01.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.877][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:01.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.915][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-09-27 16:02:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:01.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:01.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:01.941][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-09-27 16:02:01.942][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:01.943][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:01.947][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-09-27 16:02:01.948][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:01.949][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:01.950][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:01.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:01.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:01.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:01.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:01.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:01.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:01.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:01.962][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.963][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.964][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:01.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:01.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.969][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.972][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:01.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:01.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.977][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.978][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.980][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:01.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.993][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.994][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.996][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.003][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.004][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.005][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.007][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.008][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.015][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.020][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.021][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.023][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.028][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.029][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.030][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.031][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.035][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.036][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.038][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.080][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-09-27 16:02:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.106][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-09-27 16:02:02.107][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.109][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.113][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-09-27 16:02:02.114][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.115][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.116][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.128][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.129][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.131][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.136][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.137][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.138][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.143][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.146][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.154][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.162][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.169][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.171][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.173][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.181][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.189][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.194][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.205][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.252][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-09-27 16:02:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.273][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-09-27 16:02:02.274][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.276][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.279][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-09-27 16:02:02.280][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.282][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.283][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.294][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.295][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.297][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.302][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.303][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.305][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.310][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.313][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.320][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.328][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.335][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.337][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.339][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.347][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.352][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.355][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.360][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.360][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.362][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.367][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.368][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.370][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.416][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-09-27 16:02:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.438][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-09-27 16:02:02.439][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.440][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.444][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-09-27 16:02:02.445][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.446][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.447][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.462][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.470][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.478][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.483][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.485][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.493][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.501][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.502][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.505][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.513][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.517][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.520][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.528][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.529][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.533][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.534][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.536][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.583][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-09-27 16:02:02.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.605][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-09-27 16:02:02.606][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.608][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.612][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-09-27 16:02:02.613][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.614][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.615][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.630][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.635][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.638][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.643][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.646][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.651][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.652][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.654][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.661][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.666][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.667][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.669][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.670][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.673][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.681][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.689][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.694][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.695][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.697][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.709][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.751][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-09-27 16:02:02.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.773][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-09-27 16:02:02.774][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.775][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.779][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-09-27 16:02:02.780][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.781][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.782][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.795][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.796][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.801][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.802][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.804][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.805][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.812][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.817][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.818][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.820][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.828][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:02.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.835][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.837][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.839][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.841][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:02.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.847][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:02.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.852][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.859][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.864][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.865][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.867][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:02.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.875][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:02.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:02.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:02.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.917][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-09-27 16:02:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:02.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:02.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:02.939][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-09-27 16:02:02.940][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:02.941][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:02.945][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-09-27 16:02:02.946][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:02.947][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:02.948][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:02.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:02.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:02.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:02.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:02.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:02.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:02.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:02.960][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.963][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.968][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.968][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.974][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.981][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.984][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.990][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.993][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:02.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.008][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.009][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.011][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.012][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.032][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.034][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.041][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.047][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.049][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.056][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.058][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.065][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.066][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.112][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-09-27 16:02:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:03.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:03.145][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:03.149][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:02:03.150][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:03.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:03.662][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:03.664][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:03.666][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-09-27 16:02:03.667][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-09-27 16:02:03.669][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:03.672][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:03.674][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-09-27 16:02:03.675][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:03.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:03.687][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-09-27 16:02:03.688][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:03.689][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:03.693][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-09-27 16:02:03.694][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:03.695][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:03.697][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:03.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.708][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.711][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.716][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:03.717][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:03.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.719][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.720][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:03.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:03.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.724][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:03.725][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:03.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.727][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.728][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:03.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:03.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.732][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:03.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.735][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.743][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.748][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.749][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.751][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.756][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.758][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.766][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.771][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.774][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.779][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.780][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.782][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.787][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.788][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.790][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.838][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-09-27 16:02:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.843][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:03.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-09-27 16:02:03.881][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-09-27 16:02:03.882][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-09-27 16:02:03.883][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-09-27 16:02:03.887][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-09-27 16:02:03.888][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-09-27 16:02:03.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-09-27 16:02:03.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-09-27 16:02:03.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:03.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:03.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:03.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:03.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:03.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:03.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:03.902][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.905][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.910][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:03.911][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:03.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.913][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:02:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:02:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:03.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:03.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.921][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:02:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:02:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:03.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:03.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:02:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:02:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.934][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.935][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:02:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:02:03.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.944][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.945][ef$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.948][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.949][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-09-27 16:02:03.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:03.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.960][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.968][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:02:03.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:02:03.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.976][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-09-27 16:02:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:02:03.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.983][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:02:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:02:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:04.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:02:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:02:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.026][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-09-27 16:02:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:04.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:04.056][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:04.059][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:02:04.060][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:04.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.070][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.281][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.424][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:04.523][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:04.526][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:04.529][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-09-27 16:02:04.530][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:04.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.883][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:04.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:04.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:04.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:04.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:04.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:04.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:04.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:02:04.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:04.991][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-09-27 16:02:04.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-09-27 16:02:04.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:04.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-09-27 16:02:05.001][biodb::testThat]
biodb.INFO [2025-09-27 16:02:05.002][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-09-27 16:02:05.002][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:02:05.007][biodb::testThat]
biodb.TRACE[2025-09-27 16:02:05.010][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:05.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:05.080][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:05.082][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:05.084][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-27 16:02:05.085][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:05.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:05.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:05.111][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:05.113][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-27 16:02:05.114][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:05.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:05.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:05.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:05.162][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-27 16:02:05.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.182][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:05.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:05.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:05.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.188][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.189][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.190][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.192][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.194][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.198][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:05.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-27 16:02:05.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.238][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:05.239][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:05.240][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:05.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.242][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.243][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.245][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.246][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.247][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.248][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.249][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.250][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.252][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.254][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:05.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-27 16:02:05.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:05.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.286][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:05.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:05.288][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:05.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.290][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.291][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.293][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.296][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.297][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.298][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:05.299][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.300][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.302][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.303][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:05.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:05.320][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-27 16:02:05.321][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-27 16:02:05.322][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-27 16:02:05.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:05.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:05.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:05.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:05.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:05.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:05.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:05.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:05.338][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-27 16:02:05.339][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:05.340][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:05.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:05.634][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:05.635][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:05.637][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:05.638][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:06.109][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:06.111][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:06.114][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:06.118][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:06.447][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:06.449][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:06.451][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:06.454][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:07.147][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:07.150][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:07.152][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:07.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:07.486][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:07.488][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:07.490][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:07.493][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:07.983][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:07.986][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:07.988][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:07.992][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:08.321][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:08.322][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:08.325][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:08.327][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:08.818][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:08.820][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:08.822][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:08.826][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:09.131][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:09.132][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:09.135][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:09.137][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:09.625][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:09.627][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:09.630][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:09.634][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:09.999][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:10.000][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:10.003][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:10.005][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:10.494][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:10.497][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:10.499][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:10.503][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:10.832][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:10.834][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:10.836][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:10.838][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:11.327][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:11.329][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:11.332][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:11.336][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:11.668][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:11.670][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:11.673][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:11.675][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:12.164][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:12.166][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:12.168][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:12.172][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:12.504][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:12.505][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:12.508][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:12.510][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:12.998][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:13.001][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:13.003][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:13.014][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:13.333][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:13.334][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:13.336][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:13.338][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:13.812][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-27 16:02:13.878][biodb::testThat]
biodb.INFO [2025-09-27 16:02:13.880][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-09-27 16:02:13.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:02:13.884][biodb::testThat]
biodb.TRACE[2025-09-27 16:02:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.892][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:13.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:14.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:14.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:14.019][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:14.021][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-27 16:02:14.022][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:14.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:14.051][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:14.053][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:14.055][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-27 16:02:14.056][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:14.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:14.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:14.121][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-27 16:02:14.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.196][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:14.196][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:14.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:14.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.200][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.202][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.206][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.220][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:14.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-27 16:02:14.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.252][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:14.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:14.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:14.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.258][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.262][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.263][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.264][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.265][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.266][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.267][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.268][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-27 16:02:14.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.303][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.304][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:14.305][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:14.306][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:14.307][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.310][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.314][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.315][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.316][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:14.317][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.318][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.319][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.320][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:14.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:14.333][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-27 16:02:14.334][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-27 16:02:14.335][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-27 16:02:14.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:14.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:14.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:14.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:14.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:14.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:14.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:14.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:14.350][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-27 16:02:14.365][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:14.366][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:14.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:14.661][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:14.663][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:14.664][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:14.666][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:15.126][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:15.127][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:15.129][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:15.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:15.455][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:15.457][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:15.460][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:15.462][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:15.951][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:15.953][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:15.955][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:15.959][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:16.291][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:16.292][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:16.295][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:16.297][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:16.784][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:16.787][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:16.789][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:16.793][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:17.095][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:17.097][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:17.100][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:17.102][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:17.592][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:17.594][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:17.596][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:17.600][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:17.931][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:17.932][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:17.935][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:17.937][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:18.427][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:18.429][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:18.431][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:18.435][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:18.766][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:18.768][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:18.770][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:18.773][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:19.261][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:19.264][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:19.266][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:19.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:19.611][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:19.613][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:19.615][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:19.617][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:20.113][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:20.116][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:20.119][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:20.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:20.453][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:20.455][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:20.457][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:20.459][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:20.945][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:20.948][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:20.950][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:20.954][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:21.288][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:21.290][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:21.292][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:21.295][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:22.733][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:02:22.735][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:22.736][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:22.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:25.319][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:25.321][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:25.324][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:25.327][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:02:36.713][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-27 16:02:36.737][biodb::testThat]
biodb.INFO [2025-09-27 16:02:36.738][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-09-27 16:02:36.739][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:02:36.740][biodb::testThat]
biodb.TRACE[2025-09-27 16:02:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.747][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:02:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:36.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:36.815][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:36.817][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:36.819][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-27 16:02:36.820][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:36.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:02:36.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:36.853][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:02:36.855][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-27 16:02:36.856][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:02:36.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:36.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:36.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:02:36.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:02:36.899][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-27 16:02:36.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:36.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.919][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:36.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:36.920][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:36.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.925][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.930][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.931][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.934][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.935][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-09-27 16:02:36.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:36.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:36.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:36.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:36.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:36.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:36.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:36.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.967][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:36.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:36.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:36.970][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.973][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.982][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.983][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.984][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:36.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.989][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:36.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:36.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:36.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-09-27 16:02:37.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:37.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:37.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:37.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:37.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:37.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:37.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:02:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:37.020][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:02:37.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:02:37.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:02:37.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:37.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.027][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.031][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:37.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-09-27 16:02:37.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.036][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.037][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-09-27 16:02:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:02:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:02:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:02:37.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-09-27 16:02:37.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-27 16:02:37.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-27 16:02:37.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:02:37.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:02:37.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:02:37.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:02:37.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:02:37.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:02:37.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:02:37.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:02:37.067][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-27 16:02:37.068][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:02:37.069][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:02:37.070][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:02:53.998][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:02:53.999][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:02:54.001][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:02:54.003][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:09.291][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:09.294][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:09.296][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:09.300][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:09.891][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:09.895][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:09.898][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:09.900][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:10.356][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:10.359][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:10.362][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:10.367][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:10.698][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:10.701][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:10.704][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:10.708][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:11.199][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:11.202][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:11.204][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:11.209][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:11.746][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:11.748][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:11.751][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:11.754][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:12.349][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:12.352][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:12.355][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:12.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:12.694][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:12.696][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:12.699][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:12.702][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:13.190][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:13.193][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:13.196][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:13.200][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:13.531][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:13.566][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:13.569][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:13.573][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:14.054][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:14.057][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:14.059][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:14.064][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:14.396][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:14.398][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:14.401][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:14.404][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:14.894][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:14.897][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:14.899][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:14.904][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:15.236][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:15.238][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:15.241][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:15.243][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:15.732][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:15.734][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:15.737][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:15.741][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:16.072][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:16.074][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:16.076][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:16.079][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:16.568][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:16.571][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:16.573][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:16.578][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:16.908][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:16.909][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:16.911][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:16.913][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:17.402][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-09-27 16:04:17.434][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:17.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:17.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.441][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.443][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:17.445][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:17.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.449][ef$get] fields variable is a list.
biodb.INFO [2025-09-27 16:04:17.452][biodb::testThat]
biodb.INFO [2025-09-27 16:04:17.453][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-09-27 16:04:17.455][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:04:17.456][biodb::testThat]
biodb.TRACE[2025-09-27 16:04:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:04:17.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:17.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:17.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:17.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:17.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:17.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:17.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:04:17.537][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:04:17.703][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-27 16:04:17.704][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:17.705][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:17.706][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:17.999][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:18.000][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:18.002][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:18.003][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:18.487][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:18.491][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:18.492][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:18.495][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:18.801][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:18.802][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:18.804][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:18.806][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:24.179][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:24.181][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:24.182][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:24.183][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:24.480][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:24.481][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:24.483][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:24.484][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:25.005][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:25.006][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:25.007][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:25.009][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:25.304][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:25.305][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:25.307][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:25.308][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:25.759][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:25.760][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:25.761][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:25.764][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:26.058][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:26.059][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:26.061][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:26.062][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:26.587][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:26.589][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:26.592][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:26.596][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:26.927][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:26.929][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:26.931][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:26.934][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:27.423][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:27.426][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:27.428][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:27.432][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:27.765][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:27.767][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:27.770][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:27.772][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:28.262][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:28.265][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:28.267][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:28.272][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:28.602][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:28.604][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:28.606][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:28.609][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:29.100][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:29.103][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:29.105][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:29.110][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:29.445][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:29.447][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:29.451][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:29.454][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:29.942][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:29.944][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:29.946][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:29.949][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:30.255][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:30.256][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:30.258][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:30.260][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:30.753][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-27 16:04:30.792][biodb::testThat]
biodb.INFO [2025-09-27 16:04:30.794][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-09-27 16:04:30.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-09-27 16:04:30.798][biodb::testThat]
biodb.TRACE[2025-09-27 16:04:30.803][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-09-27 16:04:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:04:30.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:30.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:30.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:30.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:30.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:30.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:30.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:04:30.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:04:30.891][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:04:30.893][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-09-27 16:04:30.894][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:04:30.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:30.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:30.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:30.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:30.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:30.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:30.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-09-27 16:04:30.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:04:30.923][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-09-27 16:04:30.925][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-09-27 16:04:30.926][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-09-27 16:04:30.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:30.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:30.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:30.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:30.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:30.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:30.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:04:30.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:30.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:30.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:30.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:30.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:30.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:30.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:30.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:30.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:30.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-09-27 16:04:30.976][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-09-27 16:04:30.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:30.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:30.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:30.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:30.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:30.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:30.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.009][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.046][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.086][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.086][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:04:31.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:04:31.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:04:31.089][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.090][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.091][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.093][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.094][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.095][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.096][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.100][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.104][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.107][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.111][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.114][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.115][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.116][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.118][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.119][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.122][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.125][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.126][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.129][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.130][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.131][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.133][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.133][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.136][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.137][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.140][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.141][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.142][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.144][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.145][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.147][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.151][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.155][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.156][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.157][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.158][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.159][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.160][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.162][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.166][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.167][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.168][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.169][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.170][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.173][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.177][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.178][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-27 16:04:31.179][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-27 16:04:31.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.182][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.183][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.186][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.190][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.191][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.193][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.197][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.201][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.202][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.203][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.204][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.208][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.209][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.210][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.212][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.213][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.215][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.219][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.220][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-27 16:04:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.236][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.240][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.255][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.315][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.318][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.322][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-09-27 16:04:31.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:31.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:31.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:31.371][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:31.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:31.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:31.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.475][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.476][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:04:31.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:04:31.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:04:31.479][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.483][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.484][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.485][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.487][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.491][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.492][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.495][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.499][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.503][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.507][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.511][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.512][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.515][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.516][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.517][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.519][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.523][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.524][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.525][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.527][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.528][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.529][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.531][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.532][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.533][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.535][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.539][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.543][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.545][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.547][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.551][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.555][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.559][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.563][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.564][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.565][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.567][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.568][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.569][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.571][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.572][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.574][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.586][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.587][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.588][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.593][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.594][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.595][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.597][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.599][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.601][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.602][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.605][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.606][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.607][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.609][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.612][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.616][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.617][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.620][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.621][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.624][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.625][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.628][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.632][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.636][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.637][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-27 16:04:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-09-27 16:04:31.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:31.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:31.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:31.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:31.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:31.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:31.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-09-27 16:04:31.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.836][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.879][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.880][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-09-27 16:04:31.881][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-09-27 16:04:31.882][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-09-27 16:04:31.883][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-09-27 16:04:31.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.886][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.890][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.894][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.897][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.901][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.904][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.908][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.909][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.911][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.915][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.918][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.922][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.925][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.926][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.929][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.930][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.933][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.936][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.940][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.941][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.943][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.947][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-09-27 16:04:31.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.950][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.951][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.954][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.957][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.958][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:31.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.961][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.962][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:31.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:31.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.965][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.965][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:31.966][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:31.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.968][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.969][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-27 16:04:31.970][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-09-27 16:04:31.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:31.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:31.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.973][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.974][ef$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:31.975][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:31.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.977][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:31.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.981][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.981][ef$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:31.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:31.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.984][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.985][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:31.986][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:31.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.988][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.991][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:31.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.995][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:31.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:31.999][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:31.999][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.002][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.003][ef$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:32.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:32.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.006][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:32.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:32.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.009][ef$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.010][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-09-27 16:04:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-09-27 16:04:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-09-27 16:04:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-09-27 16:04:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-09-27 16:04:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-09-27 16:04:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-09-27 16:04:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-09-27 16:04:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:32.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:32.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-09-27 16:04:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-09-27 16:04:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-09-27 16:04:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-09-27 16:04:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-09-27 16:04:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-09-27 16:04:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:32.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-09-27 16:04:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-09-27 16:04:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-09-27 16:04:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-09-27 16:04:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-09-27 16:04:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-09-27 16:04:32.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-09-27 16:04:32.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-09-27 16:04:32.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-09-27 16:04:32.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-09-27 16:04:32.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:04:32.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:04:32.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:04:32.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:04:32.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:04:32.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-09-27 16:04:32.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-09-27 16:04:32.159][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-09-27 16:04:32.160][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:32.161][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:32.163][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:32.459][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:32.460][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:32.462][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:32.463][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:32.913][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:32.914][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:32.915][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:32.917][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:33.209][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:33.210][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:33.212][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:33.214][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:33.703][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:33.706][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:33.708][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:33.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:34.043][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:34.044][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:34.046][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:34.048][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:34.536][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:34.538][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:34.540][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:34.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:34.876][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:34.878][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:34.880][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:34.882][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:35.361][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:35.364][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:35.366][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:35.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:35.698][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:35.699][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:35.702][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:35.704][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:36.194][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:36.197][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:36.199][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:36.203][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:36.534][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:36.535][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:36.537][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:36.540][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:37.027][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:37.030][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:37.032][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:37.036][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:37.365][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:37.367][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:37.369][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:37.372][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:04:38.168][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:04:38.170][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:04:38.171][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:04:38.174][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:04:39.465][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:04:39.467][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:04:39.469][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:04:39.471][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:05:04.866][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:05:04.869][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:05:04.871][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:05:04.875][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:05:05.209][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:05:05.211][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:05:05.213][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:05:05.216][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:05:05.708][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-09-27 16:05:05.710][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-09-27 16:05:05.713][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-09-27 16:05:05.717][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-09-27 16:05:06.048][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-09-27 16:05:06.050][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-09-27 16:05:06.052][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-09-27 16:05:06.055][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-09-27 16:05:06.549][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-09-27 16:05:06.568][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-09-27 16:05:06.570][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-09-27 16:05:06.571][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-09-27 16:05:06.572][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-09-27 16:05:06.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-09-27 16:05:06.574][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-09-27 16:05:06.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-09-27 16:05:06.576][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-09-27 16:05:06.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)