Back to Long Tests report for BioC 3.22

This page was generated on 2025-10-18 23:55 -0400 (Sat, 18 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4887
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4677
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.15.1  (landing page)
Pierrick Roger
Snapshot Date: 2025-10-18 09:55 -0400 (Sat, 18 Oct 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: devel
git_last_commit: b5e26aa
git_last_commit_date: 2025-06-24 10:11:00 -0400 (Tue, 24 Jun 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.15.1
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
StartedAt: 2025-10-18 16:01:09 -0400 (Sat, 18 Oct 2025)
EndedAt: 2025-10-18 16:02:43 -0400 (Sat, 18 Oct 2025)
EllapsedTime: 93.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-10-18 16:01:46.454][biodb::testContext]
biodb.INFO [2025-10-18 16:01:46.456][biodb::testContext] ********************************************************************************
biodb.INFO [2025-10-18 16:01:46.457][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-10-18 16:01:46.458][biodb::testContext] ********************************************************************************
biodb.INFO [2025-10-18 16:01:46.459][biodb::testContext]
biodb.INFO [2025-10-18 16:01:46.465][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.2.
biodb.DEBUG[2025-10-18 16:01:46.467][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-10-18 16:01:46.474][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-18 16:01:46.475][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-10-18 16:01:46.476][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.480][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-10-18 16:01:46.497][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.501][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-10-18 16:01:46.502][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.514][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-10-18 16:01:46.514][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-10-18 16:01:46.515][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-10-18 16:01:46.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.519][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-10-18 16:01:46.520][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-10-18 16:01:46.521][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.524][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-10-18 16:01:46.525][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-10-18 16:01:46.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.528][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-10-18 16:01:46.529][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-10-18 16:01:46.530][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-10-18 16:01:46.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.533][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-10-18 16:01:46.534][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.538][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-10-18 16:01:46.538][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-10-18 16:01:46.539][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-10-18 16:01:46.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.543][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-10-18 16:01:46.544][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-10-18 16:01:46.545][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-10-18 16:01:46.545][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-10-18 16:01:46.546][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-10-18 16:01:46.547][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-10-18 16:01:46.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.551][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-10-18 16:01:46.552][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-10-18 16:01:46.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.555][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-10-18 16:01:46.556][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-10-18 16:01:46.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.559][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-10-18 16:01:46.560][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-10-18 16:01:46.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.564][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-10-18 16:01:46.564][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-10-18 16:01:46.565][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-10-18 16:01:46.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.569][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-10-18 16:01:46.570][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-10-18 16:01:46.574][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-10-18 16:01:46.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.577][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-10-18 16:01:46.578][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-10-18 16:01:46.579][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-10-18 16:01:46.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.585][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-10-18 16:01:46.615][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.630][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-10-18 16:01:46.631][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.632][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-18 16:01:46.633][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.634][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.635][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.635][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.636][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-10-18 16:01:46.637][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-18 16:01:46.638][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.639][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-10-18 16:01:46.640][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-18 16:01:46.641][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.642][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.643][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-18 16:01:46.643][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-18 16:01:46.643][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-18 16:01:46.643][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-10-18 16:01:46.643][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-10-18 16:01:46.644][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-18 16:01:46.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.646][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-18 16:01:46.647][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.648][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.649][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.650][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.651][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-18 16:01:46.652][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-18 16:01:46.653][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.653][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.655][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-10-18 16:01:46.656][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.657][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-10-18 16:01:46.658][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.659][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-18 16:01:46.660][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.661][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.662][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.663][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.664][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-10-18 16:01:46.664][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-18 16:01:46.665][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.666][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-10-18 16:01:46.667][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-18 16:01:46.668][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.670][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-18 16:01:46.670][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-18 16:01:46.670][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-18 16:01:46.670][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-10-18 16:01:46.670][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-10-18 16:01:46.671][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-18 16:01:46.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.674][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-18 16:01:46.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.675][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.676][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.677][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.678][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-18 16:01:46.679][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-18 16:01:46.680][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.681][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.682][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-10-18 16:01:46.683][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.684][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-10-18 16:01:46.685][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.686][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-18 16:01:46.687][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.688][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.689][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.690][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.691][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-10-18 16:01:46.692][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-18 16:01:46.693][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.693][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-10-18 16:01:46.694][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-18 16:01:46.695][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.696][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.697][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.698][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-18 16:01:46.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.701][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-18 16:01:46.702][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.703][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.704][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.705][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-18 16:01:46.706][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-18 16:01:46.707][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.708][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.709][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-10-18 16:01:46.710][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.716][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-10-18 16:01:46.717][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.718][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-18 16:01:46.719][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.720][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.720][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.721][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.722][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-10-18 16:01:46.723][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-18 16:01:46.724][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.725][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-10-18 16:01:46.726][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-18 16:01:46.727][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.728][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:46.729][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.730][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-10-18 16:01:46.730][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.731][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.732][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-18 16:01:46.733][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:46.734][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:46.735][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-18 16:01:46.736][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.737][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-18 16:01:46.737][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-18 16:01:46.738][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:46.739][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-10-18 16:01:46.743][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-18 16:01:46.743][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.811][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-10-18 16:01:46.826][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-10-18 16:01:46.829][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-10-18 16:01:46.831][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-10-18 16:01:46.832][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-10-18 16:01:46.834][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-10-18 16:01:46.835][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-10-18 16:01:46.837][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-10-18 16:01:46.838][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-10-18 16:01:46.840][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-10-18 16:01:46.841][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-10-18 16:01:46.842][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-10-18 16:01:46.844][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-10-18 16:01:46.845][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-10-18 16:01:46.847][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-10-18 16:01:46.848][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-10-18 16:01:46.850][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-10-18 16:01:46.851][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-10-18 16:01:46.853][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-10-18 16:01:46.854][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-10-18 16:01:46.856][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-10-18 16:01:46.857][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-10-18 16:01:46.858][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-10-18 16:01:46.860][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-10-18 16:01:46.861][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-10-18 16:01:46.863][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-10-18 16:01:46.864][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-10-18 16:01:46.866][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-10-18 16:01:46.867][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-10-18 16:01:46.868][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-10-18 16:01:46.870][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-10-18 16:01:46.871][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-10-18 16:01:46.873][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-10-18 16:01:46.874][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-10-18 16:01:46.876][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-10-18 16:01:46.877][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-10-18 16:01:46.879][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-10-18 16:01:46.880][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-10-18 16:01:46.881][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-10-18 16:01:46.883][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-10-18 16:01:46.884][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-10-18 16:01:46.886][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-10-18 16:01:46.887][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-10-18 16:01:46.889][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-10-18 16:01:46.890][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-10-18 16:01:46.892][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-10-18 16:01:46.893][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-10-18 16:01:46.894][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-10-18 16:01:46.896][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-10-18 16:01:46.897][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-10-18 16:01:46.899][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-10-18 16:01:46.900][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-10-18 16:01:46.902][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-10-18 16:01:46.903][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-10-18 16:01:46.904][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-10-18 16:01:46.906][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-10-18 16:01:46.907][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-10-18 16:01:46.909][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-10-18 16:01:46.910][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-10-18 16:01:46.912][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-10-18 16:01:46.913][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-10-18 16:01:46.915][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-10-18 16:01:46.916][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-10-18 16:01:46.917][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-10-18 16:01:46.919][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-10-18 16:01:46.920][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-10-18 16:01:46.922][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-10-18 16:01:46.923][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-10-18 16:01:46.925][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-10-18 16:01:46.926][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-10-18 16:01:46.927][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-10-18 16:01:46.929][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-10-18 16:01:46.930][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-10-18 16:01:46.932][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-10-18 16:01:46.933][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-10-18 16:01:46.935][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-10-18 16:01:46.936][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-10-18 16:01:46.938][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-10-18 16:01:46.939][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-10-18 16:01:46.957][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-10-18 16:01:46.959][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-10-18 16:01:46.960][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-10-18 16:01:46.962][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-10-18 16:01:46.968][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-10-18 16:01:46.970][initialize] This is biodb version 1.17.2.
biodb.DEBUG[2025-10-18 16:01:46.974][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-10-18 16:01:46.974][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.976][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:46.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:46.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:46.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:46.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:46.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:46.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:46.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:46.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:46.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:46.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:46.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.002][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.008][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-10-18 16:01:47.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:47.084][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-10-18 16:01:47.093][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-10-18 16:01:47.095][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:47.096][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-10-18 16:01:47.097][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:47.098][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-10-18 16:01:47.099][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:47.100][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-10-18 16:01:47.101][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:47.102][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-10-18 16:01:47.102][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-10-18 16:01:47.103][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-10-18 16:01:47.104][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:47.105][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-10-18 16:01:47.106][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-10-18 16:01:47.107][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-10-18 16:01:47.108][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-10-18 16:01:47.109][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-10-18 16:01:47.109][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-10-18 16:01:47.109][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-10-18 16:01:47.110][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-10-18 16:01:47.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:47.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:47.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-10-18 16:01:47.114][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-10-18 16:01:47.115][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-10-18 16:01:47.116][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-10-18 16:01:47.116][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-10-18 16:01:47.116][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-10-18 16:01:47.117][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-10-18 16:01:47.118][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-10-18 16:01:47.119][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-10-18 16:01:47.120][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-10-18 16:01:47.120][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-10-18 16:01:47.126][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-10-18 16:01:47.127][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-10-18 16:01:47.129][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-10-18 16:01:47.130][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-10-18 16:01:47.132][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-10-18 16:01:47.133][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-10-18 16:01:47.155][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-10-18 16:01:47.170][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-10-18 16:01:47.178][biodb::testThat]
biodb.INFO [2025-10-18 16:01:47.186][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-10-18 16:01:47.186][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:47.187][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:47.190][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-10-18 16:01:47.192][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:47.195][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:47.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:47.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:47.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:47.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:47.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:47.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:47.226][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.229][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.245][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.246][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.248][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.272][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.276][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.279][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.284][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.287][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.292][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.293][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.295][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.300][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.301][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.302][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.303][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.307][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:47.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.310][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:47.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.318][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.325][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.331][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:47.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.333][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:47.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.341][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:47.419][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-10-18 16:01:47.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.465][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:47.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:47.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:47.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:47.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:47.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.560][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.562][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.585][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.586][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.588][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.610][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.612][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.623][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.634][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.637][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.662][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.686][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.740][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.741][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.742][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.743][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.764][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.767][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.768][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.789][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.790][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.792][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.813][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.814][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.816][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.838][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.841][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.865][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.876][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:47.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:47.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.879][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:47.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:47.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.885][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:47.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:47.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.895][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:47.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:47.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.902][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.905][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:47.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.908][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.912][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.913][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:47.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.915][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:47.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.921][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.926][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:47.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.928][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.931][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:47.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.934][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.938][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:47.939][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.941][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:47.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:47.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:47.947][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:47.963][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-10-18 16:01:47.995][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:47.996][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:47.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:47.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:47.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:48.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:48.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:48.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:48.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:48.008][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.011][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.031][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.032][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.034][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.039][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.046][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.054][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.061][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.066][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.067][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.069][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.074][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.075][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.077][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.078][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.084][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.089][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.092][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.097][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:48.098][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.099][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:48.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.104][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.105][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.107][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:48.149][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-10-18 16:01:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.190][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:48.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.283][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.285][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.308][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.310][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.332][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.334][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.356][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.359][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.385][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.388][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.413][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.435][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.438][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.453][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.460][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.463][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.485][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.486][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.488][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.499][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.506][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.510][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.511][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.513][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.514][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.538][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.563][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.566][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.590][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.604][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.608][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.611][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.617][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.624][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.630][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.634][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.635][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.637][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.643][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.650][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.654][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.657][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.663][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.667][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.668][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.669][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.673][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-10-18 16:01:48.675][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:48.676][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:48.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:48.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:48.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:48.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:48.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:48.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:48.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:48.687][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.688][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.690][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.695][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.696][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.698][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:48.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.705][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:48.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.715][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.717][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.723][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.724][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.729][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.730][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.732][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.737][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.739][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.744][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.747][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.752][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.754][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.756][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:48.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.759][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:48.760][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.762][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.770][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:48.812][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-10-18 16:01:48.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:48.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:48.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.919][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.922][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.933][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.947][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.972][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.994][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.995][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:48.997][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:48.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.008][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.016][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.019][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.020][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.022][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.023][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.044][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.045][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.051][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.075][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.100][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.122][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.125][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.148][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.150][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.173][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.174][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.175][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.186][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.187][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.189][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.193][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.195][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.202][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.208][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.219][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.223][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.225][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.229][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.232][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.235][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.238][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.242][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.244][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.251][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.254][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.256][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.257][ef$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:49.263][biodb::testThat]
biodb.INFO [2025-10-18 16:01:49.264][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-10-18 16:01:49.265][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:49.266][biodb::testThat]
biodb.DEBUG[2025-10-18 16:01:49.268][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-10-18 16:01:49.270][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-10-18 16:01:49.273][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:49.280][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-10-18 16:01:49.284][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-10-18 16:01:49.288][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-10-18 16:01:49.288][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:49.290][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-10-18 16:01:49.291][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:49.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:49.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:49.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:49.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:49.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:49.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:49.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:49.302][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.303][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.305][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.310][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.311][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.313][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.314][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.320][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.328][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.333][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.334][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.336][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.340][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.343][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.348][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.351][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.356][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.358][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.366][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.371][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.374][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.381][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:49.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:49.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:49.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:49.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:49.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:49.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:49.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:49.426][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.427][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.429][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.437][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.442][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.444][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.452][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.460][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.467][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.472][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.475][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.483][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.487][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.490][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.498][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.505][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:49.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:49.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:49.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:49.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:49.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:49.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:49.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:49.547][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.550][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.555][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.556][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.557][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:49.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.562][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.563][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.569][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.576][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.584][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:49.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.591][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.596][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.599][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.606][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.614][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.622][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:49.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:49.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.629][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:49.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:49.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:49.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:49.693][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-10-18 16:01:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-10-18 16:01:49.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-10-18 16:01:49.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-10-18 16:01:49.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:49.743][biodb::testThat]
biodb.INFO [2025-10-18 16:01:49.744][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-10-18 16:01:49.745][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:49.746][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:49.748][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.749][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.751][ef$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:49.752][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-10-18 16:01:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:49.787][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-10-18 16:01:49.792][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-10-18 16:01:49.811][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:49.817][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-10-18 16:01:49.818][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-18 16:01:49.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:49.863][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:49.867][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:49.868][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:49.870][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-10-18 16:01:49.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:49.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.882][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.883][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:49.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.890][ef$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:49.894][biodb::testThat]
biodb.INFO [2025-10-18 16:01:49.894][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-10-18 16:01:49.895][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:49.896][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:49.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:49.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:49.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:49.980][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:49.983][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:49.984][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-10-18 16:01:49.998][biodb::testThat]
biodb.INFO [2025-10-18 16:01:49.998][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-10-18 16:01:49.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:50.000][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:50.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.035][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.038][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:50.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.084][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-10-18 16:01:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-10-18 16:01:50.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-10-18 16:01:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:50.100][biodb::testThat]
biodb.INFO [2025-10-18 16:01:50.101][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-10-18 16:01:50.102][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:50.103][biodb::testThat]
biodb.INFO [2025-10-18 16:01:50.111][biodb::testThat]
biodb.INFO [2025-10-18 16:01:50.112][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-10-18 16:01:50.112][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:50.113][biodb::testThat]
biodb.INFO [2025-10-18 16:01:50.119][biodb::testThat]
biodb.INFO [2025-10-18 16:01:50.120][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-10-18 16:01:50.121][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:50.122][biodb::testThat]
biodb.DEBUG[2025-10-18 16:01:50.125][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-10-18 16:01:51.087][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-10-18 16:01:51.673][biodb::testThat]
biodb.INFO [2025-10-18 16:01:51.674][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-10-18 16:01:51.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:51.678][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:51.686][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:51.688][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:51.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.691][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.693][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:51.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.697][ef$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:51.699][biodb::testThat]
biodb.INFO [2025-10-18 16:01:51.701][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-10-18 16:01:51.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:51.703][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:51.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:51.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:51.825][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:51.828][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:51.829][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-18 16:01:51.908][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:51.911][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:51.914][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:51.915][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-10-18 16:01:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:01:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:01:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:51.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:51.960][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:51.962][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-18 16:01:51.963][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:51.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:51.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:51.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:51.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:51.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:51.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:51.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:51.974][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-10-18 16:01:52.017][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.018][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.021][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-10-18 16:01:52.022][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.024][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.025][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.039][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.049][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.050][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.051][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.056][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.059][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.064][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.067][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.074][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.079][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.080][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.082][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.083][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.086][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.093][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.101][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.109][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.114][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.115][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.116][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.158][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-10-18 16:01:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:52.179][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:52.181][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:52.184][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-18 16:01:52.185][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.231][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:52.233][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-10-18 16:01:52.234][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.235][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.239][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-10-18 16:01:52.240][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.241][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.242][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.254][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.255][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.256][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.261][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.262][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.264][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.269][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.272][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.280][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.285][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.288][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.293][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.295][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.296][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.299][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.304][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.307][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.312][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.313][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.314][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.319][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.322][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.327][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.328][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.330][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.376][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-10-18 16:01:52.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:52.403][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:52.405][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:52.408][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:52.409][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:52.442][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-10-18 16:01:52.443][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.445][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.447][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-10-18 16:01:52.448][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.450][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.451][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.462][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.465][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.473][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.477][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.481][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.482][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.483][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.485][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.486][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.487][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.488][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.492][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.500][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.501][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.502][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.504][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.509][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.512][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.518][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.520][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.558][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-10-18 16:01:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:52.587][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-10-18 16:01:52.588][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.589][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.593][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-10-18 16:01:52.594][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.595][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.596][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.608][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.611][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.616][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.619][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.623][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.624][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.625][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.627][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.631][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.632][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.633][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.634][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.636][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.638][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.639][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.642][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.643][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.644][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.646][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.672][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.675][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.682][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.721][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-10-18 16:01:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:52.750][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-10-18 16:01:52.751][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.752][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.756][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-10-18 16:01:52.757][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.771][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.772][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.773][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.778][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.779][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.781][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.785][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.789][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.790][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.791][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.793][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.797][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.798][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.801][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.805][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.806][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.807][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.809][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.814][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.815][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.817][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.818][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:52.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:52.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.829][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.867][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-10-18 16:01:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:52.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:52.897][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-10-18 16:01:52.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:52.899][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:52.904][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-10-18 16:01:52.905][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:52.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:52.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:52.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:52.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:52.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:52.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:52.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:52.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:52.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:52.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.922][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.930][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.938][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.946][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.954][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:52.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.961][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.966][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.967][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.969][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.970][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.977][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.986][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.989][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:52.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:52.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.994][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.995][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:52.996][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.001][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.004][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.046][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-10-18 16:01:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.068][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-10-18 16:01:53.069][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.070][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.074][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-10-18 16:01:53.075][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.076][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.078][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.092][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.100][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.108][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.116][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.121][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.122][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.123][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.131][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.140][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.143][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.148][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.150][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.155][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.163][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.166][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.171][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.171][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.173][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.215][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-10-18 16:01:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.237][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-10-18 16:01:53.238][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.239][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.243][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-10-18 16:01:53.244][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.245][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.258][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.261][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.266][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.267][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.269][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.270][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.274][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.275][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.276][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.281][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.282][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.284][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.293][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.296][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.301][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.302][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.303][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.304][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.305][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.307][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.308][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.315][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.320][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.322][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.330][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.335][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.336][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.338][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.380][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-10-18 16:01:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.401][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-10-18 16:01:53.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.403][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.407][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-10-18 16:01:53.408][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.410][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.411][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.412][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.413][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.423][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.424][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.425][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.430][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.431][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.433][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.438][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.441][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.452][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.460][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.466][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.467][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.469][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.471][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.472][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.476][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.477][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.479][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.484][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.486][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.492][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.492][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.494][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.499][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.500][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.502][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.544][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-10-18 16:01:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.566][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-10-18 16:01:53.567][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.568][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.572][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-10-18 16:01:53.573][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.574][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.575][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.590][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.602][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.610][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.617][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.625][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.632][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.634][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.636][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.644][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.645][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.652][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.657][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.658][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.660][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.664][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.665][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.667][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.709][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-10-18 16:01:53.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.731][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-10-18 16:01:53.732][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.733][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.737][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-10-18 16:01:53.738][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.739][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.740][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.759][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.766][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.767][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.771][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.774][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.781][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.786][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.789][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.794][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.795][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.797][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.798][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.801][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.805][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.808][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.816][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.821][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.822][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.824][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.828][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.829][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.831][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.873][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-10-18 16:01:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:53.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:53.895][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-10-18 16:01:53.896][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:53.897][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:53.901][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-10-18 16:01:53.906][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:53.907][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:53.908][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:53.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:53.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:53.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:53.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:53.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:53.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:53.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:53.920][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.923][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:53.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:53.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.927][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.928][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.930][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.931][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:53.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.938][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:53.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:53.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.945][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:53.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.953][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:53.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.958][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.959][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:53.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.961][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.962][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.965][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.972][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.977][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.980][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.985][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.986][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.988][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.993][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.995][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:53.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.037][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-10-18 16:01:54.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.063][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-10-18 16:01:54.064][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.065][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.068][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-10-18 16:01:54.069][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.070][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.071][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.083][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.085][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.093][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.098][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.101][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.102][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.106][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.107][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.109][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.111][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.112][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.116][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.117][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.118][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.120][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.128][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.136][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.143][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.149][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.151][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.190][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-10-18 16:01:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.215][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-10-18 16:01:54.216][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.217][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.220][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-10-18 16:01:54.221][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.222][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.235][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.237][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.242][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.243][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.245][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.253][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.260][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.264][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.268][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.269][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.270][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.272][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.273][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.280][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.287][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.292][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.293][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.295][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.300][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.301][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.303][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.341][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-10-18 16:01:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.367][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-10-18 16:01:54.368][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.369][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.373][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-10-18 16:01:54.374][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.375][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.376][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.387][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.390][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.395][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.396][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.398][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.403][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.405][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.411][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.413][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.421][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.426][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.428][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.429][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.430][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.432][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.440][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.445][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.446][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.447][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.452][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.453][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.455][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.460][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.461][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.463][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.505][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-10-18 16:01:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.530][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-10-18 16:01:54.531][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.533][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.537][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-10-18 16:01:54.538][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.540][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.552][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.554][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.559][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.560][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.562][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.567][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.570][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.577][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.582][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.583][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.585][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.593][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.594][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.597][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.602][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.604][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.609][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.610][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.612][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.617][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.618][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.620][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.625][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.628][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.674][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-10-18 16:01:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.696][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-10-18 16:01:54.697][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.698][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.702][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-10-18 16:01:54.703][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.704][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.705][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.717][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.720][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.725][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.726][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.728][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.733][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.734][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.736][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.744][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.751][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.759][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.760][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.763][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.769][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.770][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.778][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.783][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.784][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.786][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.791][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.793][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.840][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-10-18 16:01:54.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:54.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:54.861][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-10-18 16:01:54.862][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:54.863][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:54.867][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-10-18 16:01:54.868][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:54.870][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:54.871][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:54.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:54.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:54.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:54.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:54.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:54.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:54.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:54.882][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.885][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.890][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.891][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.893][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:54.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.898][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.899][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.901][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.907][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.908][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:54.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.914][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.916][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:54.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.921][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.922][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:54.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.924][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.925][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.927][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:54.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.935][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:54.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.940][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.943][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.948][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.949][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.951][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.955][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.956][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.958][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.004][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-10-18 16:01:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:55.026][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-10-18 16:01:55.027][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:55.029][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:55.033][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-10-18 16:01:55.034][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:55.035][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:55.036][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:55.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.051][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.056][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.057][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.059][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.064][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.067][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.075][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.083][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.087][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.088][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.090][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.091][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.094][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.095][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.102][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.107][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.110][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.115][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.117][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.127][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.128][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.130][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.172][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-10-18 16:01:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:55.194][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-10-18 16:01:55.195][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:55.196][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:55.199][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-10-18 16:01:55.200][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:55.201][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:55.202][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:55.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.214][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.217][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.222][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.223][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.225][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.226][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.230][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.231][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.233][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.240][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.248][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.256][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.257][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.260][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.261][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.267][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.272][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.279][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.284][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.285][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.287][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.292][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.293][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.295][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.337][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-10-18 16:01:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:55.358][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-10-18 16:01:55.359][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:55.360][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:55.364][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-10-18 16:01:55.365][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:55.366][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:55.367][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:55.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.379][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.379][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.381][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.386][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.387][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.389][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.397][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.402][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.403][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.405][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:55.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:55.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.412][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.417][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.418][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:55.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.420][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.421][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.424][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.433][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.434][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.436][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.444][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.449][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.452][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.457][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.459][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.460][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:55.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.503][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-10-18 16:01:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:55.530][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:55.532][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:55.535][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:55.536][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:55.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.640][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.643][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.858][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:55.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:55.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:55.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:55.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:55.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:55.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:55.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:56.043][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:56.045][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:56.047][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-10-18 16:01:56.048][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-10-18 16:01:56.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:56.053][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:56.055][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-10-18 16:01:56.056][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:56.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:56.068][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-10-18 16:01:56.069][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:56.070][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:56.074][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-10-18 16:01:56.075][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:56.076][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:56.077][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:56.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.089][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.092][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.097][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:56.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:56.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.100][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:56.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:56.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.105][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:56.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:56.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.108][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:56.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:56.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.115][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:56.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:56.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.120][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.121][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.123][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.129][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.131][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.132][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.136][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:56.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:56.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.138][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:56.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:56.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.146][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:56.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:56.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.154][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:56.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.159][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:56.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:56.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.162][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:56.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.167][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:56.168][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:56.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.169][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:56.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:56.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.217][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-10-18 16:01:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-10-18 16:01:56.260][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-10-18 16:01:56.260][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-10-18 16:01:56.262][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-10-18 16:01:56.266][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-10-18 16:01:56.267][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-10-18 16:01:56.268][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-10-18 16:01:56.269][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-10-18 16:01:56.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.281][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.284][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.289][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:56.290][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:56.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.291][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:01:56.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:01:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:56.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.299][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:01:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:01:56.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:56.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:56.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.307][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:01:56.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:01:56.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.315][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:01:56.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:01:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.323][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.324][ef$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:56.325][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:56.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.327][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.328][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-10-18 16:01:56.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.340][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.345][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:56.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:56.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.348][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:01:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:01:56.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:56.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:56.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.355][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-10-18 16:01:56.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:01:56.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:56.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:56.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.363][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:01:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:01:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:01:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:01:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.406][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-10-18 16:01:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:56.433][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:56.435][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:56.438][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:56.439][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:56.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.825][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.867][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:56.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:56.903][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:56.906][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-10-18 16:01:56.907][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:56.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:56.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:56.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:56.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:56.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:56.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:56.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:56.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:01:57.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-10-18 16:01:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-10-18 16:01:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-10-18 16:01:57.374][biodb::testThat]
biodb.INFO [2025-10-18 16:01:57.375][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-10-18 16:01:57.376][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:01:57.376][biodb::testThat]
biodb.TRACE[2025-10-18 16:01:57.383][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:01:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:01:57.453][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:57.456][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:57.458][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-18 16:01:57.459][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:57.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:01:57.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:57.484][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:01:57.486][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-18 16:01:57.487][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:01:57.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:01:57.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:01:57.530][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-18 16:01:57.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.554][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:01:57.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:01:57.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:01:57.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.560][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.564][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.569][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.570][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:01:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-18 16:01:57.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.610][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:01:57.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:01:57.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:01:57.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.616][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.620][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.621][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.622][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.622][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.625][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.626][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:01:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-18 16:01:57.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:01:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.657][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:01:57.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:01:57.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:01:57.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.664][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.665][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.666][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.667][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.669][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:01:57.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.671][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.673][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.674][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:01:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:01:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:01:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:01:57.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-18 16:01:57.692][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-18 16:01:57.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-18 16:01:57.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:01:57.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:01:57.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:01:57.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:01:57.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:01:57.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:01:57.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:01:57.706][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:01:57.708][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-18 16:01:57.709][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:01:57.710][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:01:57.712][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:01:58.004][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:01:58.005][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:01:58.006][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:01:58.008][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:01:58.470][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:01:58.473][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:01:58.475][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:01:58.479][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:01:58.809][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:01:58.811][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:01:58.813][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:01:58.816][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:01:59.303][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:01:59.305][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:01:59.307][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:01:59.311][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:01:59.882][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:01:59.884][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:01:59.887][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:01:59.890][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:00.379][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:00.381][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:00.383][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:00.387][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:00.717][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:00.719][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:00.721][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:00.723][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:01.211][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:01.213][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:01.216][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:01.220][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:01.552][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:01.555][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:01.558][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:01.561][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:02.049][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:02.051][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:02.054][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:02.058][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:02.387][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:02.389][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:02.391][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:02.394][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:02.885][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:02.887][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:02.888][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:02.891][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:03.233][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:03.236][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:03.238][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:03.241][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:03.753][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:03.756][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:03.759][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:03.764][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:04.097][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:04.099][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:04.103][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:04.106][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:04.596][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:04.598][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:04.601][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:04.606][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:04.938][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:04.941][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:04.943][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:04.946][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:05.397][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:05.398][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:05.400][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:05.402][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:05.696][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:05.697][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:05.699][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:05.700][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:06.151][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-18 16:02:06.170][biodb::testThat]
biodb.INFO [2025-10-18 16:02:06.193][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-10-18 16:02:06.195][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:02:06.197][biodb::testThat]
biodb.TRACE[2025-10-18 16:02:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:06.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:06.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:06.333][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:06.335][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-18 16:02:06.336][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:06.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:02:06.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:06.366][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:06.368][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-18 16:02:06.369][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:06.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:06.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:06.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-18 16:02:06.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.510][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:06.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:06.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:06.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.517][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.520][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.521][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.531][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.535][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:06.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-18 16:02:06.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.566][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.567][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:06.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:06.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:06.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.571][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.574][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.575][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.576][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.578][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.579][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.583][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.584][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-18 16:02:06.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.621][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:06.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:06.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:06.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.628][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.632][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.633][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:06.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.637][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:06.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:06.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:06.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-18 16:02:06.652][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-18 16:02:06.653][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-18 16:02:06.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:06.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:06.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:06.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:06.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:06.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:06.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:06.666][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:06.668][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-18 16:02:06.683][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:06.684][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:06.686][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:06.978][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:06.979][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:06.981][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:06.982][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:07.456][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:07.457][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:07.458][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:07.460][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:07.792][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:07.794][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:07.796][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:07.799][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:08.288][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:08.290][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:08.293][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:08.297][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:08.618][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:08.620][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:08.622][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:08.625][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:09.114][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:09.115][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:09.116][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:09.118][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:09.414][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:09.416][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:09.418][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:09.421][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:09.894][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:09.896][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:09.898][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:09.901][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:10.230][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:10.232][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:10.234][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:10.237][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:10.724][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:10.727][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:10.729][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:10.733][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:11.054][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:11.055][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:11.057][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:11.058][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:11.515][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:11.518][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:11.520][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:11.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:11.857][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:11.858][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:11.861][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:11.863][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:12.353][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:12.355][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:12.357][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:12.369][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:12.699][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:12.701][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:12.704][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:12.706][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:13.197][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:13.199][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:13.201][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:13.205][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:13.541][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:13.543][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:13.546][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:13.549][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:14.040][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:14.042][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:14.045][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:14.049][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:14.379][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:14.380][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:14.383][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:14.385][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:14.872][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-18 16:02:14.924][biodb::testThat]
biodb.INFO [2025-10-18 16:02:14.925][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-10-18 16:02:14.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:02:14.928][biodb::testThat]
biodb.TRACE[2025-10-18 16:02:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:14.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:14.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:14.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:14.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:15.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:15.009][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:15.011][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-18 16:02:15.012][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:15.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:02:15.040][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:15.043][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:15.045][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-18 16:02:15.046][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:15.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:15.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:15.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:15.090][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-18 16:02:15.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.109][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:15.110][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:15.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:15.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.115][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.119][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.120][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.121][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.125][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.126][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:15.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-10-18 16:02:15.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.157][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.158][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:15.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:15.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:15.161][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.165][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.169][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.175][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.179][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.180][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.193][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-10-18 16:02:15.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.212][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:15.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:15.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:15.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.219][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.222][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.224][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-10-18 16:02:15.225][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.228][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.229][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-10-18 16:02:15.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:15.242][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-10-18 16:02:15.243][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-18 16:02:15.244][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-18 16:02:15.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:15.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:15.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:15.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:15.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:15.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:15.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:15.257][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:15.259][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-18 16:02:15.260][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:15.261][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:15.263][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:15.554][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:15.555][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:15.557][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:15.558][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:16.024][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:16.026][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:16.027][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:16.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:16.350][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:16.352][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:16.355][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:16.358][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:16.844][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:16.846][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:16.849][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:16.853][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:17.182][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:17.184][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:17.186][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:17.189][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:17.677][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:17.679][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:17.682][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:17.686][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:18.017][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:18.018][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:18.021][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:18.023][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:18.523][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:18.527][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:18.530][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:18.535][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:18.866][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:18.868][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:18.871][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:18.874][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:19.363][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:19.365][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:19.368][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:19.373][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:19.702][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:19.704][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:19.707][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:19.709][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:20.218][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:20.222][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:20.226][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:20.231][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:20.563][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:20.566][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:20.569][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:20.573][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:21.064][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:21.067][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:21.070][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:21.074][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:21.413][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:21.415][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:21.418][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:21.420][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:21.911][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:21.913][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:21.916][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:21.920][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:22.253][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:22.255][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:22.258][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:22.260][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:22.750][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:22.753][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:22.755][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:22.760][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:23.093][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:23.095][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:23.099][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:23.102][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:23.592][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.TRACE[2025-10-18 16:02:23.612][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:23.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:23.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.616][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:23.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.622][ef$get] fields variable is a list.
biodb.INFO [2025-10-18 16:02:23.625][biodb::testThat]
biodb.INFO [2025-10-18 16:02:23.626][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-10-18 16:02:23.628][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:02:23.629][biodb::testThat]
biodb.TRACE[2025-10-18 16:02:23.633][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:23.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:23.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:23.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:23.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:23.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:23.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:23.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:23.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:23.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:23.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:23.713][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-18 16:02:23.714][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:23.715][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:23.867][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:24.161][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:24.163][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:24.165][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:24.167][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:24.631][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:24.633][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:24.634][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:24.636][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:24.951][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:24.952][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:24.954][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:24.956][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:25.423][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:25.426][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:25.428][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:25.432][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:25.764][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:25.766][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:25.768][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:25.771][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:26.260][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:26.262][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:26.264][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:26.268][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:26.598][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:26.600][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:26.602][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:26.605][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:27.103][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:27.107][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:27.110][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:27.115][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:27.452][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:27.453][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:27.456][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:27.459][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:27.952][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:27.955][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:27.957][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:27.962][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:28.297][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:28.299][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:28.302][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:28.306][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:28.798][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:28.801][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:28.803][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:28.808][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:29.145][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:29.146][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:29.149][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:29.151][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:29.642][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:29.644][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:29.647][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:29.651][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:29.990][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:29.991][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:29.994][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:29.996][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:30.486][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:30.489][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:30.491][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:30.495][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:30.835][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:30.837][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:30.841][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:30.844][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:31.333][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:31.336][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:31.338][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:31.343][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:31.676][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:31.677][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:31.680][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:31.682][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:32.172][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-18 16:02:32.212][biodb::testThat]
biodb.INFO [2025-10-18 16:02:32.214][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-10-18 16:02:32.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-10-18 16:02:32.218][biodb::testThat]
biodb.TRACE[2025-10-18 16:02:32.223][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-10-18 16:02:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:32.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:32.308][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:32.311][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:32.313][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-10-18 16:02:32.314][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:32.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:32.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-10-18 16:02:32.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:32.344][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-10-18 16:02:32.346][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-10-18 16:02:32.347][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-10-18 16:02:32.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:32.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:32.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.393][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-10-18 16:02:32.397][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-10-18 16:02:32.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.427][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.431][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.470][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.492][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.510][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.511][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:32.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:32.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:32.514][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.515][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.518][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.518][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.519][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.521][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.522][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.523][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.525][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.528][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.532][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.536][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.537][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.538][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.539][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.540][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.541][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.543][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.547][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.547][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.548][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.550][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.554][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.555][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.556][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.558][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.559][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.561][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.562][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.563][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.565][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.569][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.570][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.571][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.572][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.576][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.580][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.581][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.582][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.583][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.584][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.587][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.588][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.589][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.591][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.592][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.593][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.594][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.595][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.598][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.599][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.600][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.602][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.603][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-18 16:02:32.604][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-18 16:02:32.605][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.607][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.608][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.611][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.615][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.616][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.618][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.622][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.624][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.626][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.629][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.633][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.634][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.635][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.637][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.638][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.639][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.640][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.641][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.642][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.644][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.645][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-18 16:02:32.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.736][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.743][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.747][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.779][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-10-18 16:02:32.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:32.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:32.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:32.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:32.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:32.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:32.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.878][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.879][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:32.880][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:32.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:32.882][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.883][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.885][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.886][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.889][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.893][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.894][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.895][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.896][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.898][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.900][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.904][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.908][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.908][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.911][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.915][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.918][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.922][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.926][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.927][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.930][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.930][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.933][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.937][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.938][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.941][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.944][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.948][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.950][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.952][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.953][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:32.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.955][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:32.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.959][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.960][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.961][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.963][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.964][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:32.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:32.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.967][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:32.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:32.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.970][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.971][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.976][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:32.977][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:32.978][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:32.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.979][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.980][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:32.981][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.983][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:32.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.987][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.987][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:32.988][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.990][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:32.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:32.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.994][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.995][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.996][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:32.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:32.997][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:32.998][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:32.999][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.001][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.005][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.008][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.009][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.010][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.012][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.013][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.014][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.015][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.016][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.017][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.019][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.020][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-18 16:02:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.036][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-10-18 16:02:33.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:33.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:33.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:33.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:33.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:33.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:33.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-10-18 16:02:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.263][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.268][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.299][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:33.300][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-10-18 16:02:33.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-10-18 16:02:33.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-10-18 16:02:33.303][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-10-18 16:02:33.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.307][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.311][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.312][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.313][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.315][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.319][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.323][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.327][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.328][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.329][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.331][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.332][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.333][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.335][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.338][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.339][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.340][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.342][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.343][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.346][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.347][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.348][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.350][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.351][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.354][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.358][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.362][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.363][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.364][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.366][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.368][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.370][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.371][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.372][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.373][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.374][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.375][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-10-18 16:02:33.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.377][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.378][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.381][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.382][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.385][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.386][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.387][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.389][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.390][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.391][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.393][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.394][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.395][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.397][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.398][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-18 16:02:33.399][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-10-18 16:02:33.400][ef$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.403][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.404][ef$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.405][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.407][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.408][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.409][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.411][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.412][ef$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.413][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.415][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.416][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.417][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.419][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.421][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.423][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.424][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.427][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.429][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.430][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.431][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.432][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.434][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.435][ef$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.438][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.438][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.439][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.441][ef$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.442][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-10-18 16:02:33.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-10-18 16:02:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-10-18 16:02:33.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.458][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-10-18 16:02:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-10-18 16:02:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-10-18 16:02:33.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-10-18 16:02:33.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-10-18 16:02:33.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-10-18 16:02:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-10-18 16:02:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-10-18 16:02:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-10-18 16:02:33.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-10-18 16:02:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-10-18 16:02:33.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-10-18 16:02:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-10-18 16:02:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-10-18 16:02:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-10-18 16:02:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-10-18 16:02:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-10-18 16:02:33.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-10-18 16:02:33.575][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-10-18 16:02:33.576][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-10-18 16:02:33.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-10-18 16:02:33.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:33.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:33.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:33.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:33.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:33.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-10-18 16:02:33.590][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-10-18 16:02:33.592][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-10-18 16:02:33.593][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:33.594][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:33.596][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:33.890][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:33.891][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:33.893][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:33.894][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:34.344][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:34.345][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:34.346][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:34.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:34.639][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:34.640][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:34.641][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:34.643][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:35.205][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:35.206][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:35.207][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:35.208][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:35.498][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:35.500][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:35.501][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:35.502][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:35.959][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:35.961][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:35.964][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:35.967][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:36.298][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:36.300][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:36.302][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:36.305][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:36.793][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:36.795][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:36.797][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:36.801][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:37.136][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:37.137][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:37.140][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:37.142][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:37.663][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:37.665][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:37.667][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:37.671][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:38.005][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:38.007][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:38.010][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:38.013][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:38.502][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:38.504][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:38.507][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:38.511][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:38.843][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:38.845][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:38.848][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:38.851][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:39.341][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:39.344][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:39.346][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:39.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:39.680][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:39.682][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:39.685][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:39.687][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:40.175][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:40.177][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:40.180][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:40.184][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:40.516][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:40.518][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:40.520][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:40.523][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:41.012][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-10-18 16:02:41.015][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-10-18 16:02:41.017][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-10-18 16:02:41.021][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-10-18 16:02:41.352][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-10-18 16:02:41.354][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-10-18 16:02:41.356][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-10-18 16:02:41.359][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-10-18 16:02:41.847][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
biodb.INFO [2025-10-18 16:02:41.875][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-10-18 16:02:41.878][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-10-18 16:02:41.880][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-10-18 16:02:41.882][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-10-18 16:02:41.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-10-18 16:02:41.886][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-10-18 16:02:41.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-10-18 16:02:41.889][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-10-18 16:02:41.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 0 | PASS 412 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.15.1’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)