Back to Long Tests report for BioC 3.22

This page was generated on 2025-11-16 16:54 -0500 (Sun, 16 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4903
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-11-15 09:55 -0500 (Sat, 15 Nov 2025)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  

CHECK results for biodbChebi on nebbiolo2

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2025-11-15 16:01:10 -0500 (Sat, 15 Nov 2025)
EndedAt: 2025-11-15 16:02:44 -0500 (Sat, 15 Nov 2025)
EllapsedTime: 94.0 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-11-15 16:01:47.577][biodb::testContext]
biodb.INFO [2025-11-15 16:01:47.579][biodb::testContext] ********************************************************************************
biodb.INFO [2025-11-15 16:01:47.588][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-11-15 16:01:47.589][biodb::testContext] ********************************************************************************
biodb.INFO [2025-11-15 16:01:47.590][biodb::testContext]
biodb.INFO [2025-11-15 16:01:47.596][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2025-11-15 16:01:47.597][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-11-15 16:01:47.604][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-11-15 16:01:47.605][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-11-15 16:01:47.606][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.609][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-11-15 16:01:47.625][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.628][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-11-15 16:01:47.629][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.633][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-11-15 16:01:47.634][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-11-15 16:01:47.635][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-11-15 16:01:47.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.638][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-11-15 16:01:47.639][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-11-15 16:01:47.640][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.643][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-11-15 16:01:47.644][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-11-15 16:01:47.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.647][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-11-15 16:01:47.648][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-11-15 16:01:47.649][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-11-15 16:01:47.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.653][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-11-15 16:01:47.654][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.657][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-11-15 16:01:47.658][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-11-15 16:01:47.659][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-11-15 16:01:47.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.662][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-11-15 16:01:47.663][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-11-15 16:01:47.664][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-11-15 16:01:47.665][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-11-15 16:01:47.666][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-11-15 16:01:47.667][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-11-15 16:01:47.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.670][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-11-15 16:01:47.671][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-11-15 16:01:47.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.674][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-11-15 16:01:47.675][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-11-15 16:01:47.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.679][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-11-15 16:01:47.680][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-11-15 16:01:47.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.683][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-11-15 16:01:47.684][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-11-15 16:01:47.685][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-11-15 16:01:47.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.688][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-11-15 16:01:47.689][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-11-15 16:01:47.693][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-11-15 16:01:47.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.697][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-11-15 16:01:47.698][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-11-15 16:01:47.699][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-11-15 16:01:47.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.705][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-11-15 16:01:47.735][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.750][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-11-15 16:01:47.751][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.752][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-11-15 16:01:47.752][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.754][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.755][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.756][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-11-15 16:01:47.757][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-11-15 16:01:47.758][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.759][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-11-15 16:01:47.760][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-11-15 16:01:47.761][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.762][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.763][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-11-15 16:01:47.763][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-11-15 16:01:47.763][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-11-15 16:01:47.763][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-11-15 16:01:47.763][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-11-15 16:01:47.764][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-11-15 16:01:47.765][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.765][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.766][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-11-15 16:01:47.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.768][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.769][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.770][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.771][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-11-15 16:01:47.771][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-11-15 16:01:47.772][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.773][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.774][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-11-15 16:01:47.776][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.777][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-11-15 16:01:47.783][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.784][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-11-15 16:01:47.785][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.786][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.787][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.788][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.789][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-11-15 16:01:47.790][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-11-15 16:01:47.791][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.792][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-11-15 16:01:47.793][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-11-15 16:01:47.793][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.794][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.795][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-11-15 16:01:47.795][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-11-15 16:01:47.795][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-11-15 16:01:47.795][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-11-15 16:01:47.795][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-11-15 16:01:47.796][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-11-15 16:01:47.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-11-15 16:01:47.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.801][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.802][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.803][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-11-15 16:01:47.804][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-11-15 16:01:47.805][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.806][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.807][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-11-15 16:01:47.808][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.809][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-11-15 16:01:47.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.811][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-11-15 16:01:47.812][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.813][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.814][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.815][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.816][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-11-15 16:01:47.817][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-11-15 16:01:47.818][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.819][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-11-15 16:01:47.820][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-11-15 16:01:47.820][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.821][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.822][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.823][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-11-15 16:01:47.824][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.825][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.826][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-11-15 16:01:47.827][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.828][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.828][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.829][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.830][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-11-15 16:01:47.831][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-11-15 16:01:47.832][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.833][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.834][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-11-15 16:01:47.836][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.836][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-11-15 16:01:47.837][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.838][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-11-15 16:01:47.839][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.840][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.841][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.842][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.843][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-11-15 16:01:47.844][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-11-15 16:01:47.845][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.846][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-11-15 16:01:47.847][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-11-15 16:01:47.847][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.848][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:47.849][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.850][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-11-15 16:01:47.851][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.852][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.853][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-11-15 16:01:47.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:47.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:47.855][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-11-15 16:01:47.856][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.857][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-11-15 16:01:47.858][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-11-15 16:01:47.859][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:47.860][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2025-11-15 16:01:47.863][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-11-15 16:01:47.864][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.895][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:47.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:47.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:47.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:47.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:47.932][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-11-15 16:01:47.936][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-11-15 16:01:47.945][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-11-15 16:01:47.948][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-11-15 16:01:47.949][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-11-15 16:01:47.951][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-11-15 16:01:47.952][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-11-15 16:01:47.954][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-11-15 16:01:47.955][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-11-15 16:01:47.957][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-11-15 16:01:47.958][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-11-15 16:01:47.960][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-11-15 16:01:47.961][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-11-15 16:01:47.963][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-11-15 16:01:47.964][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-11-15 16:01:47.966][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-11-15 16:01:47.967][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-11-15 16:01:47.969][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-11-15 16:01:47.970][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-11-15 16:01:47.972][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-11-15 16:01:47.973][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-11-15 16:01:47.974][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-11-15 16:01:47.976][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-11-15 16:01:47.977][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-11-15 16:01:47.979][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-11-15 16:01:47.980][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-11-15 16:01:47.982][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-11-15 16:01:48.002][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-11-15 16:01:48.003][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-11-15 16:01:48.005][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-11-15 16:01:48.006][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-11-15 16:01:48.008][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-11-15 16:01:48.009][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-11-15 16:01:48.010][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-11-15 16:01:48.012][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-11-15 16:01:48.013][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-11-15 16:01:48.015][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-11-15 16:01:48.016][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-11-15 16:01:48.017][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-11-15 16:01:48.019][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-11-15 16:01:48.020][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-11-15 16:01:48.022][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-11-15 16:01:48.023][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-11-15 16:01:48.025][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-11-15 16:01:48.026][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-11-15 16:01:48.027][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-11-15 16:01:48.029][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-11-15 16:01:48.030][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-11-15 16:01:48.032][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-11-15 16:01:48.033][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-11-15 16:01:48.035][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-11-15 16:01:48.036][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-11-15 16:01:48.038][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-11-15 16:01:48.039][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-11-15 16:01:48.041][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-11-15 16:01:48.042][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-11-15 16:01:48.044][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-11-15 16:01:48.045][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-11-15 16:01:48.047][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-11-15 16:01:48.048][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-11-15 16:01:48.050][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-11-15 16:01:48.051][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-11-15 16:01:48.052][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-11-15 16:01:48.054][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-11-15 16:01:48.055][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-11-15 16:01:48.057][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-11-15 16:01:48.058][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-11-15 16:01:48.059][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-11-15 16:01:48.061][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-11-15 16:01:48.062][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-11-15 16:01:48.064][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-11-15 16:01:48.065][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-11-15 16:01:48.067][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-11-15 16:01:48.068][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-11-15 16:01:48.069][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-11-15 16:01:48.071][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-11-15 16:01:48.072][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-11-15 16:01:48.074][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-11-15 16:01:48.075][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-11-15 16:01:48.076][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-11-15 16:01:48.078][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-11-15 16:01:48.079][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-11-15 16:01:48.081][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-11-15 16:01:48.087][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-11-15 16:01:48.089][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2025-11-15 16:01:48.092][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-11-15 16:01:48.093][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.095][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-11-15 16:01:48.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:48.203][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-11-15 16:01:48.211][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-11-15 16:01:48.213][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:48.214][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-11-15 16:01:48.215][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:48.216][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-11-15 16:01:48.217][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:48.218][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-11-15 16:01:48.219][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:48.220][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-11-15 16:01:48.221][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-11-15 16:01:48.221][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-11-15 16:01:48.222][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:48.223][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-11-15 16:01:48.224][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-11-15 16:01:48.225][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-11-15 16:01:48.226][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-11-15 16:01:48.227][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-11-15 16:01:48.227][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-11-15 16:01:48.227][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-11-15 16:01:48.228][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-11-15 16:01:48.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:48.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:48.231][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-11-15 16:01:48.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-11-15 16:01:48.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-11-15 16:01:48.233][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-11-15 16:01:48.234][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-11-15 16:01:48.234][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-11-15 16:01:48.235][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-11-15 16:01:48.236][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-11-15 16:01:48.237][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-11-15 16:01:48.238][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-11-15 16:01:48.238][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-11-15 16:01:48.243][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-11-15 16:01:48.245][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-11-15 16:01:48.246][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-11-15 16:01:48.248][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-11-15 16:01:48.249][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-11-15 16:01:48.250][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-11-15 16:01:48.272][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-11-15 16:01:48.287][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-11-15 16:01:48.295][biodb::testThat]
biodb.INFO [2025-11-15 16:01:48.295][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-11-15 16:01:48.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:48.297][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:48.300][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-11-15 16:01:48.302][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:48.305][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:48.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:48.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:48.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:48.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:48.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:48.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:48.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:48.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.341][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.359][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.360][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.389][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.390][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.392][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.407][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.408][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.416][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.422][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.423][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.425][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.428][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:48.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.431][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.439][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.444][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.444][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.446][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:48.452][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.454][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.455][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:48.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.462][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:48.533][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-11-15 16:01:48.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:48.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.675][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.735][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.757][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.760][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:48.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:48.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.782][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.785][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.810][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.828][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.833][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.834][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:48.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.853][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.856][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.859][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.860][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:48.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.881][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.888][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.899][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.912][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.934][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.935][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.937][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:48.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:48.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.962][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.987][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:48.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:48.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.001][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.004][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.005][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.007][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.015][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.023][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.030][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.034][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.035][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.037][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.047][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.050][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.057][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.062][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.063][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.065][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.072][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.076][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.077][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.079][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.096][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-11-15 16:01:49.133][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:49.134][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:49.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:49.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:49.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:49.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:49.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:49.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:49.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:49.148][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.151][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.174][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.176][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.181][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.182][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.184][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.193][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.207][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.212][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.213][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.215][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.216][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.220][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.223][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.231][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.236][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.239][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.241][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.245][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:49.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.248][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.253][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.254][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.256][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:49.302][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-11-15 16:01:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:49.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:49.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:49.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:49.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.360][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:49.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.455][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.480][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.481][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.483][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:49.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.507][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.510][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.526][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.540][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.543][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.555][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.567][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.570][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.594][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.597][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.622][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.623][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.625][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.650][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.651][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.653][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.677][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.680][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.710][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.711][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.713][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.740][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.767][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.795][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.808][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.811][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.815][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.816][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.818][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.822][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.825][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.830][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.831][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.833][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.838][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.840][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.845][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.847][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.854][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.859][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.861][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.865][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.868][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.878][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.881][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.886][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.888][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.892][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-11-15 16:01:49.893][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:49.894][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:49.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:49.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:49.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:49.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:49.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:49.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:49.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:49.907][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.908][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.910][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.915][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.916][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.918][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.927][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.935][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.944][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:49.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.950][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.952][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.953][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.958][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.961][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:49.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.969][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.974][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.977][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:49.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:49.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.983][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:49.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.986][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.991][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.992][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.994][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:49.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:49.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:49.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:50.040][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-11-15 16:01:50.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:50.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:50.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.160][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.161][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.163][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.190][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.210][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.221][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.223][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.250][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.262][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.270][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.277][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.301][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.302][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.304][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.328][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.329][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.331][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.343][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.355][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.356][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.358][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.388][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.391][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.392][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.415][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.418][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.446][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.462][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.466][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.467][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.469][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.477][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.481][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.482][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.484][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.489][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.491][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.495][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.496][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.498][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.502][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.505][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.512][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.516][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.518][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.519][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.524][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.527][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.534][ef$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:50.541][biodb::testThat]
biodb.INFO [2025-11-15 16:01:50.542][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-11-15 16:01:50.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:50.544][biodb::testThat]
biodb.DEBUG[2025-11-15 16:01:50.546][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-11-15 16:01:50.550][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-11-15 16:01:50.559][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:50.566][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-11-15 16:01:50.577][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-11-15 16:01:50.581][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-11-15 16:01:50.582][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:50.583][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-11-15 16:01:50.584][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:50.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:50.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:50.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:50.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:50.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:50.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:50.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:50.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.600][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.606][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.609][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.617][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.626][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.634][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.642][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.647][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.649][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.651][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.652][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.659][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.664][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.665][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.667][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.673][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.676][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.681][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.684][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:50.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:50.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:50.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:50.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:50.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:50.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:50.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:50.729][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.732][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.738][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.739][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.741][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.752][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.755][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.761][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.763][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.768][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.769][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.771][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.776][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.777][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.779][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.784][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.787][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.792][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.793][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.795][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.801][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.803][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.809][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.812][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.820][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:50.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:50.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:50.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:50.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:50.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:50.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:50.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:50.866][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.869][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.874][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.875][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.877][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:50.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:50.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.885][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:50.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.894][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.902][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.907][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.910][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:50.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.921][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.924][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.925][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:50.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:50.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.932][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.937][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.940][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:50.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:50.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.945][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.946][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.948][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.950][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:50.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:50.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.954][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.955][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.957][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:50.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:51.027][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-11-15 16:01:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-11-15 16:01:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-11-15 16:01:51.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-11-15 16:01:51.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:51.094][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.095][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-11-15 16:01:51.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.097][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:51.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.103][ef$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:51.104][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-11-15 16:01:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:51.143][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-11-15 16:01:51.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-11-15 16:01:51.170][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:51.176][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-11-15 16:01:51.177][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-11-15 16:01:51.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:51.227][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:51.231][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:51.238][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:51.240][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-11-15 16:01:51.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:51.252][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:51.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.254][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.255][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.258][ef$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:51.261][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.262][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-11-15 16:01:51.263][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.264][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:51.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:51.358][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:51.362][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:51.363][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-11-15 16:01:51.378][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.379][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-11-15 16:01:51.380][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.380][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:51.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:51.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:51.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:51.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-11-15 16:01:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-11-15 16:01:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-11-15 16:01:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:51.492][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.493][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-11-15 16:01:51.494][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.495][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.504][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.505][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-11-15 16:01:51.505][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.506][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.513][biodb::testThat]
biodb.INFO [2025-11-15 16:01:51.514][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-11-15 16:01:51.515][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:51.516][biodb::testThat]
biodb.DEBUG[2025-11-15 16:01:51.520][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-11-15 16:01:52.557][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-11-15 16:01:52.887][biodb::testThat]
biodb.INFO [2025-11-15 16:01:52.889][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-11-15 16:01:52.891][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:52.892][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:52.901][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:52.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:52.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:52.906][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:52.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:52.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:52.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:52.912][ef$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:52.926][biodb::testThat]
biodb.INFO [2025-11-15 16:01:52.928][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-11-15 16:01:52.929][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:52.930][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:52.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:53.050][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:53.053][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:53.057][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:53.058][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-11-15 16:01:53.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:53.152][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:53.155][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:53.156][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-11-15 16:01:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:01:53.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:01:53.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:53.204][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:53.207][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:53.209][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-11-15 16:01:53.210][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.212][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.213][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:53.223][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-11-15 16:01:53.276][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:53.278][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:53.282][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-11-15 16:01:53.283][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.284][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:53.285][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:53.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.300][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.302][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.308][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.309][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.311][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.316][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.321][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.330][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.338][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.343][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.344][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.346][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.347][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.350][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.356][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.358][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.371][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.377][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.378][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.379][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.387][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.431][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-11-15 16:01:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:53.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:53.455][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:53.457][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-11-15 16:01:53.458][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:53.525][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-11-15 16:01:53.527][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:53.528][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:53.531][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-11-15 16:01:53.532][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.534][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:53.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:53.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.548][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.551][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.556][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.559][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.564][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.565][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.567][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.575][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.580][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.581][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.583][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.588][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.589][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.591][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.592][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.593][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.595][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.600][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.601][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.603][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.608][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.610][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.615][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.616][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.618][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.623][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.624][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.626][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.674][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-11-15 16:01:53.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:53.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:53.703][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:53.707][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:53.708][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:53.741][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-11-15 16:01:53.742][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:53.743][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:53.746][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-11-15 16:01:53.747][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.748][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:53.749][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:53.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.761][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.764][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.769][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.770][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.772][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.776][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.780][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.782][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.784][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.788][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.792][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.796][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.797][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.798][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.800][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.806][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.808][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.821][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.860][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-11-15 16:01:53.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:53.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:53.890][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-11-15 16:01:53.891][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:53.892][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:53.896][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-11-15 16:01:53.897][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:53.898][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:53.899][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:53.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:53.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:53.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:53.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:53.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:53.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:53.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:53.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.914][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.919][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:53.920][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:53.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.922][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.923][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:53.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:53.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.926][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.927][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:53.928][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:53.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.930][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:53.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.934][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.936][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.938][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.939][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:53.940][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:53.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.942][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.944][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:53.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.946][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.950][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:53.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.960][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.961][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.962][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:53.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:53.968][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:53.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.970][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:53.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:53.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.009][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-11-15 16:01:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.030][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.039][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-11-15 16:01:54.040][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.041][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.045][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-11-15 16:01:54.046][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.047][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.048][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.063][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.068][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.071][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.072][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.075][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.077][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.079][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.080][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.083][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.087][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.088][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.091][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.092][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.093][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.095][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.100][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.103][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.109][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.110][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.111][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.116][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.117][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.119][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.158][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-11-15 16:01:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.189][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-11-15 16:01:54.190][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.191][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.196][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-11-15 16:01:54.197][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.198][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.199][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.212][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.215][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.220][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.221][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.223][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.224][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.231][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.236][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.239][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.251][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.258][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.259][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.264][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.267][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.275][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.283][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.288][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.289][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.291][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.296][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.297][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.299][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.343][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-11-15 16:01:54.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.365][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-11-15 16:01:54.366][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.367][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.372][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-11-15 16:01:54.373][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.374][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.375][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.391][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.394][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.402][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.407][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.410][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.415][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.416][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.417][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.425][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.433][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.438][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.441][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.449][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.454][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.457][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.462][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.465][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.470][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.471][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.473][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.516][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-11-15 16:01:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.542][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-11-15 16:01:54.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.544][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.548][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-11-15 16:01:54.549][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.550][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.552][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.564][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.565][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.567][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.572][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.573][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.574][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.576][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.580][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.582][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.590][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.598][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.606][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.608][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.609][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.610][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.611][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.618][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.626][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.632][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.633][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.634][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.639][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.640][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.642][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.690][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-11-15 16:01:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.712][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-11-15 16:01:54.713][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.714][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.718][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-11-15 16:01:54.719][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.720][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.721][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.737][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.744][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.750][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.751][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.752][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.760][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.768][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.776][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.777][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.778][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.780][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.785][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.786][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.788][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.793][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.795][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.801][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.802][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.803][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.808][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.809][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.815][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.859][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-11-15 16:01:54.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:54.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:54.881][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-11-15 16:01:54.882][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:54.883][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:54.887][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-11-15 16:01:54.888][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:54.889][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:54.890][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:54.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:54.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:54.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:54.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:54.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:54.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:54.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:54.902][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.905][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.910][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.911][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.913][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.914][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:54.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:54.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.918][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.921][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.928][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:54.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.933][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.936][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:54.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.941][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.942][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.944][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.945][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.946][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.948][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.949][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:54.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:54.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.960][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:54.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.968][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.976][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.981][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.983][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:54.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:54.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:54.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:54.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:54.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:54.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.027][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-11-15 16:01:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.049][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-11-15 16:01:55.050][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.051][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.055][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-11-15 16:01:55.056][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.058][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.070][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.073][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.078][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.081][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.086][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.089][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.101][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.109][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.115][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.116][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.118][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.120][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.125][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.128][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.136][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.141][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.144][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.149][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.150][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.152][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.195][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-11-15 16:01:55.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.217][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-11-15 16:01:55.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.219][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.223][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-11-15 16:01:55.224][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.225][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.226][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.246][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.251][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.253][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.261][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.269][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.275][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.277][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.282][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.283][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.285][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.286][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.289][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.290][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.297][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.302][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.305][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.313][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.318][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.319][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.321][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.364][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-11-15 16:01:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.390][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-11-15 16:01:55.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.393][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.395][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-11-15 16:01:55.396][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.397][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.398][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.411][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.414][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.419][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.422][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.427][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.429][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.437][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.441][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.443][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.444][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.445][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.447][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.449][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.454][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.455][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.457][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.462][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.465][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.473][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.481][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.524][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-11-15 16:01:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.546][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-11-15 16:01:55.547][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.548][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.551][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-11-15 16:01:55.552][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.553][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.554][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.566][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.569][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.574][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.577][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.583][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.585][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.593][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.594][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.595][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.597][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.598][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.599][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.601][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.602][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.605][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.610][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.612][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.617][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.620][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.625][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.628][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.636][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.679][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-11-15 16:01:55.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.701][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-11-15 16:01:55.702][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.703][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.707][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-11-15 16:01:55.708][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.709][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.710][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.723][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.726][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.731][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.733][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.735][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.739][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.741][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.749][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.754][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.755][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.757][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.762][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.763][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.765][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.766][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.767][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.769][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.770][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.774][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.777][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.782][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.784][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.790][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.791][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.792][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.802][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.803][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.804][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:55.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.847][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-11-15 16:01:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:55.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:55.869][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-11-15 16:01:55.870][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:55.872][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:55.876][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-11-15 16:01:55.877][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:55.878][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:55.879][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:55.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:55.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:55.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:55.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:55.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:55.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:55.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:55.891][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.894][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:55.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:55.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.899][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.900][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.902][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.907][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.910][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:55.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.918][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.925][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:55.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.938][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.940][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.942][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.964][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.972][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.978][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.981][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:55.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:55.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.989][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.991][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:55.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:55.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:55.995][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:55.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:55.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:55.998][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.045][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-11-15 16:01:56.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:56.069][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-11-15 16:01:56.070][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:56.072][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:56.076][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-11-15 16:01:56.077][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.079][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:56.080][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:56.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.093][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.096][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.101][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.102][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.104][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.105][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.113][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.114][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.116][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.117][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.124][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.132][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.137][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.139][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.140][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.143][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.148][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.151][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.156][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.157][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.159][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.164][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.165][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.167][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.172][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.173][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.175][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.218][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-11-15 16:01:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:56.240][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-11-15 16:01:56.241][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:56.242][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:56.246][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-11-15 16:01:56.247][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.248][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:56.253][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:56.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.268][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.273][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.274][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.276][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.283][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.291][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.296][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.297][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.299][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.304][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.305][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.306][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.307][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.308][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.310][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.318][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.326][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.331][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.332][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.333][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.335][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.341][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.387][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-11-15 16:01:56.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:56.409][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-11-15 16:01:56.410][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:56.411][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:56.415][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-11-15 16:01:56.416][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.417][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:56.418][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:56.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.433][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.438][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.441][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.442][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.446][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.447][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.448][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.456][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.461][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.462][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.464][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.469][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.470][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.472][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.473][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.475][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.477][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.480][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.483][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.489][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.491][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.496][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.499][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.503][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.504][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.506][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.556][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-11-15 16:01:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:56.578][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-11-15 16:01:56.579][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:56.580][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:56.583][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-11-15 16:01:56.584][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.585][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:56.586][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:56.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.598][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.599][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.601][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.606][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.609][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.616][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.624][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.632][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.639][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.643][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.651][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.659][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.671][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.678][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.720][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-11-15 16:01:56.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:56.742][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-11-15 16:01:56.743][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:56.744][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:56.747][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-11-15 16:01:56.748][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.749][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:56.751][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:56.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.753][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.764][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.765][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.770][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.771][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.773][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.774][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.778][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.779][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.781][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:56.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:56.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.786][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.787][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.789][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:56.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.796][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.808][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.810][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.812][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.820][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.825][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.827][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.835][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.843][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.885][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-11-15 16:01:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:56.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:56.915][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:56.918][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:56.919][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:56.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:56.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:56.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:56.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:56.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:56.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:56.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:56.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.047][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.230][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:57.440][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:57.443][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:57.445][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-11-15 16:01:57.446][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-11-15 16:01:57.449][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:57.452][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:57.455][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-11-15 16:01:57.456][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:57.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:57.468][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-11-15 16:01:57.469][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:57.471][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:57.475][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-11-15 16:01:57.476][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:57.477][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:57.479][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:57.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.495][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.511][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:57.512][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:57.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.514][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.515][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:57.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:57.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:57.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:57.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.522][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:57.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.530][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:57.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:57.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.536][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.538][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.543][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.544][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.545][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.550][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:57.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.553][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.561][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.566][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:57.567][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:57.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.569][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:57.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.574][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:57.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:57.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.577][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:57.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:57.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.582][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:57.583][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:57.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.585][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.628][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-11-15 16:01:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-11-15 16:01:57.674][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-11-15 16:01:57.675][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-11-15 16:01:57.676][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-11-15 16:01:57.680][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-11-15 16:01:57.681][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-11-15 16:01:57.682][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-11-15 16:01:57.683][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-11-15 16:01:57.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.695][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.698][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.703][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:57.704][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:57.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.706][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:01:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:01:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.711][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:57.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.714][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:01:57.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:01:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:57.719][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:57.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.721][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:01:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:01:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.726][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.729][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:01:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.734][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:01:57.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.736][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.738][ef$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:57.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.740][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-11-15 16:01:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:57.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.748][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.753][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:57.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:57.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.756][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:01:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:01:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.761][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:57.762][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:57.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.763][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.764][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-11-15 16:01:57.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:01:57.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.768][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:57.769][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:57.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.771][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:01:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:01:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:01:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:01:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.817][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-11-15 16:01:57.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:57.844][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:57.847][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:57.850][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:57.851][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:57.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:57.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:57.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:57.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:57.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:57.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:57.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:57.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:57.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.108][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:58.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:58.312][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:58.315][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-11-15 16:01:58.316][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:58.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.477][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:01:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-11-15 16:01:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-11-15 16:01:58.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-11-15 16:01:58.790][biodb::testThat]
biodb.INFO [2025-11-15 16:01:58.791][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-11-15 16:01:58.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:01:58.793][biodb::testThat]
biodb.TRACE[2025-11-15 16:01:58.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:01:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.833][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:01:58.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:58.872][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:58.873][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-11-15 16:01:58.874][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:58.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:01:58.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:58.900][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:01:58.902][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-11-15 16:01:58.902][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:01:58.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:01:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:01:58.946][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-11-15 16:01:58.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:58.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:58.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:58.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:58.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:58.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:58.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:58.965][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:01:58.966][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:01:58.967][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:01:58.968][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:58.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.971][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.972][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.973][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.975][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:58.977][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:58.978][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.979][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.980][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.981][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:01:58.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:58.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:58.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:58.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.007][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-11-15 16:01:59.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:59.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:59.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:59.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:59.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:59.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:59.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.025][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:01:59.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:01:59.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:01:59.028][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.031][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.032][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.033][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.035][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.037][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.039][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.041][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.041][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:01:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-11-15 16:01:59.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:59.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:59.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:59.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:59.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:59.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:59.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:01:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.072][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.073][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:01:59.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:01:59.074][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:01:59.075][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.077][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.079][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.083][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.085][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:01:59.085][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.086][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.088][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.089][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:01:59.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:01:59.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:01:59.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:01:59.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-11-15 16:01:59.102][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-11-15 16:01:59.103][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-11-15 16:01:59.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:01:59.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:01:59.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:01:59.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:01:59.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:01:59.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:01:59.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:01:59.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:01:59.124][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-11-15 16:01:59.125][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:01:59.126][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:01:59.128][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:01:59.727][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:01:59.728][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:01:59.730][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:01:59.731][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:00.215][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:00.218][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:00.220][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:00.224][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:00.566][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:00.568][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:00.570][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:00.573][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:01.066][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:01.068][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:01.071][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:01.075][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:01.420][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:01.422][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:01.424][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:01.427][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:01.917][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:01.920][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:01.922][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:01.926][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:02.269][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:02.271][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:02.274][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:02.277][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:02.769][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:02.771][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:02.773][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:02.777][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:03.125][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:03.126][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:03.128][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:03.130][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:03.691][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:03.692][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:03.693][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:03.695][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:04.002][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:04.004][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:04.006][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:04.008][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:04.500][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:04.502][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:04.503][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:04.506][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:04.834][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:04.835][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:04.836][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:04.838][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:05.557][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:05.559][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:05.562][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:05.566][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:05.943][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:05.944][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:05.946][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:05.947][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:06.404][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:06.406][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:06.406][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:06.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:06.715][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:06.716][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:06.718][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:06.719][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:07.175][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:07.176][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:07.177][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:07.179][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:07.485][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:07.486][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:07.487][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:07.489][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:07.947][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-11-15 16:02:07.999][biodb::testThat]
biodb.INFO [2025-11-15 16:02:08.000][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-11-15 16:02:08.001][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:02:08.002][biodb::testThat]
biodb.TRACE[2025-11-15 16:02:08.005][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.008][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.012][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:08.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:08.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.311][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:08.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:08.317][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:08.318][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-11-15 16:02:08.319][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:08.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:02:08.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:08.345][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:08.347][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-11-15 16:02:08.347][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:08.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:08.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:08.412][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-11-15 16:02:08.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.496][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:08.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:08.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:08.499][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.503][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.508][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.520][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.524][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-11-15 16:02:08.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.561][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:08.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:08.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:08.568][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.569][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.570][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.572][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.575][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.577][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.581][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.582][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:08.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-11-15 16:02:08.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.612][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:08.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:08.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:08.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.616][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.617][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.618][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.619][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.620][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.622][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.624][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:08.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.627][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.628][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:08.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:08.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:08.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:08.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-11-15 16:02:08.641][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-11-15 16:02:08.642][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-11-15 16:02:08.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:08.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:08.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:08.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:08.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:08.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:08.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:08.655][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:08.657][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-11-15 16:02:08.671][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:08.672][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:08.674][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:08.989][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:08.990][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:08.992][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:08.993][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:09.449][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:09.450][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:09.451][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:09.453][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:09.761][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:09.762][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:09.764][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:09.765][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:10.226][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:10.228][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:10.231][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:10.235][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:10.573][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:10.574][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:10.575][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:10.577][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:11.065][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:11.066][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:11.067][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:11.068][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:11.375][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:11.376][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:11.378][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:11.380][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:11.866][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:11.868][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:11.869][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:11.870][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:12.175][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:12.176][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:12.177][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:12.179][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:12.633][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:12.634][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:12.635][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:12.637][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:12.945][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:12.946][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:12.947][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:12.949][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:13.404][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:13.405][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:13.406][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:13.408][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:13.719][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:13.720][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:13.722][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:13.723][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:14.040][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:14.041][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:14.042][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:14.044][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:14.352][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:14.353][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:14.355][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:14.356][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:14.811][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:14.812][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:14.813][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:14.815][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:15.122][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:15.123][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:15.125][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:15.126][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:15.583][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:15.584][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:15.585][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:15.587][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:15.892][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:15.893][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:15.895][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:15.896][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:16.351][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-11-15 16:02:16.404][biodb::testThat]
biodb.INFO [2025-11-15 16:02:16.405][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-11-15 16:02:16.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:02:16.407][biodb::testThat]
biodb.TRACE[2025-11-15 16:02:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.421][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.458][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:16.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:16.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:16.486][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:16.487][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-11-15 16:02:16.488][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:16.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:02:16.511][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:16.514][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:16.515][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-11-15 16:02:16.516][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:16.518][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:16.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:16.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:16.560][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-11-15 16:02:16.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.578][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.579][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:16.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:16.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:16.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.585][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.586][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.587][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.589][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.590][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.591][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.594][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.595][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:16.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-11-15 16:02:16.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.627][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:16.628][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:16.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:16.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.633][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.637][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.639][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.640][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.641][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.642][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.643][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:16.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-11-15 16:02:16.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.675][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:16.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:16.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:16.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.681][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.685][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.686][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.687][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-11-15 16:02:16.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.690][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.691][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-11-15 16:02:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:16.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-11-15 16:02:16.708][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-11-15 16:02:16.709][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-11-15 16:02:16.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:16.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:16.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:16.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:16.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:16.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:16.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:16.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:16.724][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-11-15 16:02:16.725][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:16.726][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:16.727][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:17.033][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:17.034][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:17.036][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:17.037][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:17.514][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:17.515][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:17.516][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:17.518][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:17.852][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:17.854][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:17.856][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:17.859][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:18.350][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:18.352][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:18.355][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:18.359][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:18.700][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:18.701][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:18.702][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:18.704][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:19.161][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:19.162][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:19.163][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:19.165][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:19.472][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:19.473][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:19.476][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:19.478][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:19.969][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:19.972][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:19.974][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:19.978][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:20.324][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:20.326][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:20.329][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:20.332][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:20.828][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:20.831][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:20.833][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:20.837][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:21.180][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:21.181][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:21.184][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:21.186][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:21.680][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:21.683][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:21.685][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:21.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:22.036][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:22.038][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:22.041][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:22.044][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:22.539][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:22.542][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:22.544][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:22.548][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:22.894][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:22.896][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:22.899][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:22.902][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:23.410][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:23.412][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:23.414][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:23.417][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:23.760][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:23.762][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:23.764][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:23.766][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:24.228][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:24.230][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:24.233][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:24.237][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:24.578][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:24.579][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:24.582][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:24.584][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:25.079][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2025-11-15 16:02:25.154][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:25.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:25.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.158][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.159][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:25.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:25.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.162][ef$get] fields variable is a list.
biodb.INFO [2025-11-15 16:02:25.164][biodb::testThat]
biodb.INFO [2025-11-15 16:02:25.165][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-11-15 16:02:25.165][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:02:25.166][biodb::testThat]
biodb.TRACE[2025-11-15 16:02:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.173][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.177][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:25.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:25.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:25.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:25.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:25.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:25.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:25.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:25.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:25.241][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-11-15 16:02:25.242][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:25.243][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:25.245][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:25.552][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:25.553][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:25.554][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:25.556][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:26.022][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:26.025][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:26.027][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:26.031][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:26.434][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:26.436][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:26.438][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:26.441][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:26.951][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:26.953][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:26.956][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:26.960][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:27.306][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:27.308][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:27.310][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:27.313][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:27.806][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:27.808][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:27.818][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:27.822][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:28.200][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:28.201][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:28.204][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:28.206][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:28.698][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:28.700][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:28.703][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:28.707][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:29.060][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:29.062][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:29.065][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:29.069][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:29.563][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:29.565][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:29.568][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:29.572][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:29.913][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:29.914][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:29.915][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:29.917][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:30.405][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:30.408][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:30.410][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:30.414][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:30.760][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:30.761][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:30.764][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:30.766][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:31.274][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:31.276][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:31.278][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:31.282][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:31.628][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:31.629][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:31.631][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:31.634][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:32.126][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:32.128][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:32.129][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:32.132][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:32.475][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:32.477][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:32.479][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:32.481][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:32.968][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:32.969][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:32.971][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:32.974][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:33.319][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:33.321][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:33.323][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:33.326][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:33.809][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-11-15 16:02:33.880][biodb::testThat]
biodb.INFO [2025-11-15 16:02:33.881][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-11-15 16:02:33.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-11-15 16:02:33.883][biodb::testThat]
biodb.TRACE[2025-11-15 16:02:33.886][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.893][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-11-15 16:02:33.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:33.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:33.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:33.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:33.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:33.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:33.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:33.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:33.954][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:33.957][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:33.959][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-11-15 16:02:33.960][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:33.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:33.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:33.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:33.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:33.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:33.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:33.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:33.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-11-15 16:02:33.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:33.985][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-11-15 16:02:33.987][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-11-15 16:02:33.988][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-11-15 16:02:33.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:33.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:33.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:33.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:33.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:33.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:33.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:33.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:34.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:34.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:34.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:34.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:34.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:34.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:34.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:34.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-11-15 16:02:34.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-11-15 16:02:34.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:34.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:34.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:34.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:34.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:34.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:34.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:34.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.088][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.110][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.132][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.133][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:34.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:34.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:34.135][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.136][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.139][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.140][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.141][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.142][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.143][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.144][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.146][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.147][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.150][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.153][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.157][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.158][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.159][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.160][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.161][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.164][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.168][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.168][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.171][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.175][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.176][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.177][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.179][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.182][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.183][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.186][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.190][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.190][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.193][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.194][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.195][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.197][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.200][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.204][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.205][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.208][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.209][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.211][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.212][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.213][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.215][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.216][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.218][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.219][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.220][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.222][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.223][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-11-15 16:02:34.224][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-11-15 16:02:34.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.228][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.228][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.229][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.231][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.233][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.235][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.238][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.239][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.240][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.242][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.246][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.249][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.253][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.254][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.255][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.257][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.260][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.262][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.264][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.265][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-11-15 16:02:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.281][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-11-15 16:02:34.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:34.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:34.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:34.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:34.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:34.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:34.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.451][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.495][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.496][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:34.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:34.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:34.499][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.500][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.503][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.506][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.510][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.511][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.512][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.513][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.517][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.521][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.522][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.523][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.524][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.525][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.526][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.528][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.530][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.532][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.533][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.536][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.536][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.539][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.540][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.541][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.543][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.547][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.547][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.548][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.550][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.551][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.554][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.558][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.558][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.561][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.565][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.568][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.569][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.570][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.572][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.576][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.577][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.579][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.583][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.587][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.588][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.589][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.589][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.590][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.592][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.593][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.594][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.596][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.599][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.607][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.609][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.610][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.614][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.617][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.621][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.624][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.625][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.626][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.628][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.629][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.630][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.632][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.632][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.635][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.636][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-11-15 16:02:34.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.673][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.775][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-11-15 16:02:34.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:34.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:34.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:34.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:34.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:34.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:34.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-11-15 16:02:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.831][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.854][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.876][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.877][private$selectFields] Fields type: <NULL>
biodb.TRACE[2025-11-15 16:02:34.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-11-15 16:02:34.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-11-15 16:02:34.879][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-11-15 16:02:34.884][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.887][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.887][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.890][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.894][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.895][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.897][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.898][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.901][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.904][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.906][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.908][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.909][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.910][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.912][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.915][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.916][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.919][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.920][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.922][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.923][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.924][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.926][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.927][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.929][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.930][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.931][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.933][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.934][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.935][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.937][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.937][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.940][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.944][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.947][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.948][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.949][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-11-15 16:02:34.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.951][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.954][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.955][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.956][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.958][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.959][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.960][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:34.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.962][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:34.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:34.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.965][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:34.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:34.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.969][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.970][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-11-15 16:02:34.971][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-11-15 16:02:34.972][ef$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:34.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:34.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.974][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.975][ef$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:34.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:34.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.978][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:34.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.981][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.982][ef$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:34.983][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:34.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.985][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.986][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:34.987][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:34.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.989][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:34.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.992][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.993][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:34.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.996][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:34.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:34.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:34.999][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.000][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.001][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.003][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:35.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:35.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.006][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.007][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:35.008][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:35.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.010][ef$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.011][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-11-15 16:02:35.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:35.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:35.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-11-15 16:02:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-11-15 16:02:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-11-15 16:02:35.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-11-15 16:02:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-11-15 16:02:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:35.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:35.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-11-15 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-11-15 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:35.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-11-15 16:02:35.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-11-15 16:02:35.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-11-15 16:02:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-11-15 16:02:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-11-15 16:02:35.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-11-15 16:02:35.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:35.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.116][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-11-15 16:02:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-11-15 16:02:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:35.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:35.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:35.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-11-15 16:02:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-11-15 16:02:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-11-15 16:02:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-11-15 16:02:35.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-11-15 16:02:35.140][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-11-15 16:02:35.141][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-11-15 16:02:35.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-11-15 16:02:35.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:35.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:35.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:35.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:35.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:35.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-11-15 16:02:35.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-11-15 16:02:35.161][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-11-15 16:02:35.162][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:35.162][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:35.164][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:35.480][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:35.481][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:35.482][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:35.484][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:35.798][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:35.800][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:35.801][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:35.802][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:36.141][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:36.143][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:36.145][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:36.148][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:36.489][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:36.491][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:36.494][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:36.498][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:36.838][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:36.840][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:36.842][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:36.844][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:37.337][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:37.340][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:37.342][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:37.346][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:37.686][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:37.688][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:37.691][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:37.693][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:38.180][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:38.181][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:38.182][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:38.184][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:38.489][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:38.490][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:38.492][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:38.493][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:38.984][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:38.987][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:38.989][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:38.993][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:39.370][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:39.372][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:39.374][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:39.377][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:39.872][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:39.875][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:39.877][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:39.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:40.270][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:40.271][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:40.273][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:40.274][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:40.770][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:40.772][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:40.774][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:40.778][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:41.089][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:41.090][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:41.091][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:41.093][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:41.548][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:41.549][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:41.550][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:41.552][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:41.863][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:41.864][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:41.867][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:41.869][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:42.343][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
sched.DEBUG[2025-11-15 16:02:42.345][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-11-15 16:02:42.346][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-11-15 16:02:42.349][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-11-15 16:02:42.758][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL does not exist.
sched.TRACE[2025-11-15 16:02:42.759][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2025-11-15 16:02:42.762][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2025-11-15 16:02:42.764][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
sched.INFO [2025-11-15 16:02:43.234][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL". Retrying connection to server...
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2025-11-15 16:02:43.300][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-11-15 16:02:43.302][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-11-15 16:02:43.304][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-11-15 16:02:43.305][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-11-15 16:02:43.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-11-15 16:02:43.308][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-11-15 16:02:43.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-11-15 16:02:43.310][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-11-15 16:02:43.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 5 | WARN 0 | SKIP 1 | PASS 412 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `if (file == "" || length(file) == 0) stop("empty or no content specified")`: missing value where TRUE/FALSE needed
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─conn$annotateMzValues(...)
 4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
 5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
 6.         └─private$searchByMass(...)
 7.           └─self$wsGetLiteEntity(...)
 8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)

[ FAIL 5 | WARN 0 | SKIP 1 | PASS 412 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─conn$annotateMzValues(...)
   4.     └─self$searchForEntries(fieldsFilter, max.results = max.results)
   5.       └─private$doSearchForEntries(fields = fields, max.results = max.results)
   6.         └─private$searchByMass(...)
   7.           └─self$wsGetLiteEntity(...)
   8.             └─XML::xmlInternalTreeParse(results, asText = TRUE)
  
  [ FAIL 5 | WARN 0 | SKIP 1 | PASS 412 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)