Vincent Carey
| Snapshot Date: 2025-10-23 14:17 -0400 (Thu, 23 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/xenLite |
| git_branch: devel |
| git_last_commit: b3b7b53 |
| git_last_commit_date: 2025-04-15 13:39:59 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-24 12:08 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2345/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| xenLite 1.3.0 (landing page) Vincent Carey
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the xenLite package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xenLite.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: xenLite |
| Version: 1.3.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xenLite |
| StartedAt: 2025-10-21 04:07:09 -0000 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 04:08:12 -0000 (Tue, 21 Oct 2025) |
| EllapsedTime: 63.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data xenLite
###
##############################################################################
##############################################################################
* checking for file ‘xenLite/DESCRIPTION’ ... OK
* preparing ‘xenLite’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘xenLite.Rmd’ using rmarkdown
Quitting from xenLite.Rmd:98-106 [dolung]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:
* Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
* Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')
See https://arrow.apache.org/docs/r/articles/install.html for details
---
Backtrace:
▆
1. └─xenLite::restoreZipXenSPEP(pa)
2. ├─xenLite::loadGeometry(ans)
3. └─xenLite::loadGeometry(ans)
4. └─arrow::read_parquet(slot(x, "cellbounds_path"), as_data_frame = FALSE)
5. └─base::tryCatch(reader$ReadTable(), error = read_compressed_error)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'xenLite.Rmd' failed with diagnostics:
NotImplemented: Support for codec 'zstd' not built
In order to read this file, you will need to reinstall arrow with additional features enabled.
Set one of these environment variables before installing:
* Sys.setenv(LIBARROW_MINIMAL = "false") (for all optional features, including 'zstd')
* Sys.setenv(ARROW_WITH_ZSTD = "ON") (for just 'zstd')
See https://arrow.apache.org/docs/r/articles/install.html for details
--- failed re-building ‘xenLite.Rmd’
SUMMARY: processing the following file failed:
‘xenLite.Rmd’
Error: Vignette re-building failed.
Execution halted