| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-10-24 12:07 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1924/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scGraphVerse 0.99.21 (landing page) Francesco Cecere
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | NA | ||||||||||
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To the developers/maintainers of the scGraphVerse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scGraphVerse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: scGraphVerse |
| Version: 0.99.21 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL scGraphVerse |
| StartedAt: 2025-10-23 20:41:22 -0000 (Thu, 23 Oct 2025) |
| EndedAt: 2025-10-23 20:42:03 -0000 (Thu, 23 Oct 2025) |
| EllapsedTime: 40.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD INSTALL scGraphVerse
###
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* installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’
* installing *source* package ‘scGraphVerse’ ...
** this is package ‘scGraphVerse’ version ‘0.99.21’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c init.c -o init.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regTree.c -o regTree.o
regTree.c: In function ‘findBestSplit’:
regTree.c:232:15: warning: variable ‘lc’ set but not used [-Wunused-but-set-variable]
232 | int last, lc, nl, nr, npopl, npopr;
| ^~
regTree.c: In function ‘predictRegTree’:
regTree.c:418:19: warning: unused variable ‘cbestsplit’ [-Wunused-variable]
418 | int i, k, m, *cbestsplit, s;
| ^~~~~~~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c regrf.c -o regrf.o
regrf.c: In function ‘regRF’:
regrf.c:71:30: warning: unused variable ‘nodexts’ [-Wunused-variable]
71 | int *in, *nind, *nodex, *nodexts;
| ^~~~~~~
regrf.c:71:22: warning: variable ‘nodex’ set but not used [-Wunused-but-set-variable]
71 | int *in, *nind, *nodex, *nodexts;
| ^~~~~
regrf.c:69:10: warning: variable ‘oobpair’ set but not used [-Wunused-but-set-variable]
69 | int *oobpair, varImp, localImp, *varUsed, kk;
| ^~~~~~~
regrf.c:67:61: warning: variable ‘nPerm’ set but not used [-Wunused-but-set-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~~
regrf.c:67:31: warning: unused variable ‘jout’ [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:67:22: warning: unused variable ‘nOOB’ [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~~~
regrf.c:67:15: warning: unused variable ‘mr’ [-Wunused-variable]
67 | int k, m, mr, n, nOOB, j, jout, idx, ntest, last, ktmp, nPerm,
| ^~
regrf.c:65:36: warning: unused variable ‘ytree’ [-Wunused-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^~~~~
regrf.c:65:30: warning: variable ‘ytr’ set but not used [-Wunused-but-set-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^~~
regrf.c:65:18: warning: variable ‘xtmp’ set but not used [-Wunused-but-set-variable]
65 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini, *meanY, *varY, *ww;
| ^~~~
regrf.c:63:58: warning: variable ‘resOOB’ set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~~
regrf.c:63:50: warning: unused variable ‘delta’ [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~
regrf.c:63:38: warning: unused variable ‘ooberrperm’ [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~~~~~~
regrf.c:63:30: warning: variable ‘ooberr’ set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~~
regrf.c:63:18: warning: unused variable ‘resid’ [-Wunused-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~~
regrf.c:63:12: warning: variable ‘errb’ set but not used [-Wunused-but-set-variable]
63 | *errb, resid=0.0, *ooberr, ooberrperm, delta, *resOOB;
| ^~~~
regrf.c:62:53: warning: unused variable ‘r’ [-Wunused-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^
regrf.c:62:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^~~~~~
regrf.c:62:12: warning: unused variable ‘errts’ [-Wunused-variable]
62 | double errts = 0.0, averrb, *meanYts, *varYts, r, *xrand,
| ^~~~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o scGraphVerse.so init.o regTree.o regrf.o -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/R/R-4.5.0/site-library/00LOCK-scGraphVerse/00new/scGraphVerse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scGraphVerse)