| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-15 11:58 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4903 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1257/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metaseqR2 1.22.0 (landing page) Panagiotis Moulos
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the metaseqR2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: metaseqR2 |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metaseqR2 |
| StartedAt: 2025-11-14 18:37:34 -0500 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 18:44:36 -0500 (Fri, 14 Nov 2025) |
| EllapsedTime: 422.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 metaseqR2 ### ############################################################################## ############################################################################## * checking for file ‘metaseqR2/DESCRIPTION’ ... OK * preparing ‘metaseqR2’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘metaseqr2-annotation.Rmd’ using rmarkdown --- finished re-building ‘metaseqr2-annotation.Rmd’ --- re-building ‘metaseqr2-statistics.Rmd’ using rmarkdown adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_correlogram.png (deflated 1%) adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_heatmap.png (deflated 9%) adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_pairs.png (deflated 1%) adding: tmp/RtmpIjUpDp/test1/plots/qc/filtered_genes.png (deflated 5%) adding: tmp/RtmpIjUpDp/test1/plots/qc/mds.png (deflated 44%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/boxplot_normalized.png (deflated 17%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/boxplot_raw.png (deflated 17%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/gcbias_normalized.png (deflated 13%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/gcbias_raw.png (deflated 12%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/lengthbias_normalized.png (deflated 10%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/lengthbias_raw.png (deflated 10%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meanvar_normalized.png (deflated 6%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meanvar_raw.png (deflated 5%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 6%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 5%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 7%) adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: tmp/RtmpIjUpDp/test1/plots/qc/correlation_pairs.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test1/plots/qc/filtered_genes.pdf (deflated 7%) adding: tmp/RtmpIjUpDp/test1/plots/qc/mds.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/boxplot_normalized.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/gcbias_normalized.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/lengthbias_normalized.pdf (deflated 1%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meanvar_normalized.pdf (deflated 44%) adding: tmp/RtmpIjUpDp/test1/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 9%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: tmp/RtmpIjUpDp/test1/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 272 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 96 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 26 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 5942 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 13 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' Content type 'text/javascript; charset=utf-8' length 56670 bytes (55 KB) ================================================== downloaded 55 KB adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_correlogram.png (deflated 1%) adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_heatmap.png (deflated 9%) adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_pairs.png (deflated 1%) adding: tmp/RtmpIjUpDp/test2/plots/qc/filtered_genes.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/qc/mds.png (deflated 44%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/boxplot_normalized.png (deflated 12%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/boxplot_raw.png (deflated 17%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/gcbias_normalized.png (deflated 20%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/gcbias_raw.png (deflated 12%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/lengthbias_normalized.png (deflated 11%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/lengthbias_raw.png (deflated 10%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meanvar_normalized.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meanvar_raw.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 6%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 13%) adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: tmp/RtmpIjUpDp/test2/plots/qc/correlation_pairs.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test2/plots/qc/filtered_genes.pdf (deflated 7%) adding: tmp/RtmpIjUpDp/test2/plots/qc/mds.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/boxplot_normalized.pdf (deflated 8%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/gcbias_normalized.pdf (deflated 6%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/lengthbias_normalized.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 33%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 33%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meanvar_normalized.pdf (deflated 40%) adding: tmp/RtmpIjUpDp/test2/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: tmp/RtmpIjUpDp/test2/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 272 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 96 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 26 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 5942 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 13 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' Content type 'text/javascript; charset=utf-8' length 56670 bytes (55 KB) ================================================== downloaded 55 KB adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_correlogram.png (deflated 1%) adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_heatmap.png (deflated 9%) adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_pairs.png (deflated 1%) adding: tmp/RtmpIjUpDp/test3/plots/qc/filtered_genes.png (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/qc/mds.png (deflated 44%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/boxplot_normalized.png (deflated 18%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/boxplot_raw.png (deflated 17%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/gcbias_normalized.png (deflated 13%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/gcbias_raw.png (deflated 12%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/lengthbias_normalized.png (deflated 10%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/lengthbias_raw.png (deflated 10%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.png (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.png (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.png (deflated 3%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meanvar_normalized.png (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meanvar_raw.png (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.png (deflated 6%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.png (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.png (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.png (deflated 11%) adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_correlogram.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_heatmap.pdf (deflated 26%) adding: tmp/RtmpIjUpDp/test3/plots/qc/correlation_pairs.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/qc/filtered_genes.pdf (deflated 7%) adding: tmp/RtmpIjUpDp/test3/plots/qc/mds.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/boxplot_normalized.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/boxplot_raw.pdf (deflated 12%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/gcbias_normalized.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/gcbias_raw.pdf (deflated 4%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/lengthbias_normalized.pdf (deflated 2%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/lengthbias_raw.pdf (deflated 1%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_normalized_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 21%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_normalized_e14.5_e14.5_1_e14.5_2.pdf (deflated 21%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_raw_adult_8_weeks_a8w_1_a8w_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meandiff_raw_e14.5_e14.5_1_e14.5_2.pdf (deflated 20%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meanvar_normalized.pdf (deflated 30%) adding: tmp/RtmpIjUpDp/test3/plots/normalization/meanvar_raw.pdf (deflated 39%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_asis.pdf (deflated 10%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/de_heatmap_adult_8_weeks_vs_e14.5_zscore.pdf (deflated 8%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/mastat_plot_adult_8_weeks_vs_e14.5.pdf (deflated 5%) adding: tmp/RtmpIjUpDp/test3/plots/statistics/volcano_plot_adult_8_weeks_vs_e14.5.pdf (deflated 2%) trying URL 'https://raw.github.com/HubSpot/pace/v1.0.0/pace.min.js' Content type 'text/plain; charset=utf-8' length 12363 bytes (12 KB) ================================================== downloaded 12 KB trying URL 'https://code.highcharts.com/highcharts.js' downloaded 272 KB trying URL 'https://code.highcharts.com/highcharts-more.js' downloaded 96 KB trying URL 'https://code.highcharts.com/modules/exporting.js' downloaded 26 KB trying URL 'https://code.highcharts.com/modules/offline-exporting.js' downloaded 5942 bytes trying URL 'https://code.highcharts.com/modules/export-data.js' downloaded 13 KB trying URL 'https://unpkg.com/dexie@2.0.4/dist/dexie.min.js' Content type 'text/javascript; charset=utf-8' length 56670 bytes (55 KB) ================================================== downloaded 55 KB Quitting from metaseqr2-statistics.Rmd:437-446 [example-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'metaseqr2-statistics.Rmd' failed with diagnostics: HTTP 500 Internal Server Error. --- failed re-building ‘metaseqr2-statistics.Rmd’ SUMMARY: processing the following file failed: ‘metaseqr2-statistics.Rmd’ Error: Vignette re-building failed. Execution halted