William Nickols
| Snapshot Date: 2025-11-17 13:45 -0500 (Mon, 17 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/maaslin3 |
| git_branch: RELEASE_3_22 |
| git_last_commit: 9669f95 |
| git_last_commit_date: 2025-10-29 11:33:46 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-20 12:06 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4615 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4610 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4598 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1170/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maaslin3 1.2.0 (landing page) William Nickols
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the maaslin3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maaslin3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maaslin3 |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maaslin3.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maaslin3_1.2.0.tar.gz |
| StartedAt: 2025-11-18 08:27:06 -0500 (Tue, 18 Nov 2025) |
| EndedAt: 2025-11-18 08:33:00 -0500 (Tue, 18 Nov 2025) |
| EllapsedTime: 354.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maaslin3.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:maaslin3.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings maaslin3_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/maaslin3.Rcheck’
* using R version 4.5.2 Patched (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maaslin3/DESCRIPTION’ ... OK
* this is package ‘maaslin3’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maaslin3’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
maaslin_plot_results_from_output 18.303 0.476 20.398
maaslin_plot_results 18.156 0.435 20.387
maaslin3 8.511 0.340 10.111
maaslin_contrast_test 7.762 0.425 9.071
maaslin_write_results 6.420 0.338 7.552
maaslin_fit 5.975 0.416 7.157
maaslin_write_results_lefse_format 5.936 0.228 6.847
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
maaslin3.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL maaslin3 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘maaslin3’ ... ** this is package ‘maaslin3’ version ‘1.2.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (maaslin3)
maaslin3.Rcheck/tests/testthat.Rout
R version 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(maaslin3)
>
> test_check("maaslin3")
2025-11-18 08:30:03.017408 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:03.050161 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:03.087259 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:03.096285 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:03.110585 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:03.147704 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:03.150178 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:03.155409 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:03.207131 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:03.209421 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:03.234457 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:03.257173 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:03.262018 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:03.277625 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:03.308757 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:11.024945 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:11.05493 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:11.08516 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:11.09414 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:11.108002 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:11.144136 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:11.146357 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:11.150867 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:11.187372 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:11.189644 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:11.209719 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:11.227217 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:11.232532 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:11.250721 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:11.280509 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:13.463 R[84428:16204859] XType: Using static font registry.
2025-11-18 08:30:22.774823 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:22.806331 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:22.84365 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:22.852588 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:22.868392 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:22.902586 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:22.905204 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:22.911304 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:22.954427 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:22.957137 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:22.979612 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:22.997337 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:23.002745 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:23.027248 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:23.070454 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:29.064084 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:29.096809 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:29.130887 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:29.142109 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:29.158287 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:29.191811 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:29.194495 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:29.199986 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:29.241647 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:29.244349 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:29.267599 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:29.295592 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:29.301702 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:29.320153 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:29.348746 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:29.432519 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_linear.rds
2025-11-18 08:30:29.501683 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_linear.rds
2025-11-18 08:30:29.538509 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_logistic.rds
2025-11-18 08:30:29.727712 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_logistic.rds
2025-11-18 08:30:40.327781 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:40.37169 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:40.406511 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:40.416671 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:40.432796 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:40.464172 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:40.466551 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:40.471588 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:40.511133 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:40.51366 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:40.534489 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:40.552327 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:40.557813 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:40.589775 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:40.616499 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:46.203242 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:46.244847 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:46.282884 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:46.293049 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:46.30667 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:46.339393 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:46.341764 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:46.346713 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:46.40111 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:46.40366 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:46.424076 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:46.44127 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:46.446164 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:46.462438 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:46.489738 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:30:46.571243 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_linear.rds
2025-11-18 08:30:46.605654 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_linear.rds
2025-11-18 08:30:46.641816 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_logistic.rds
2025-11-18 08:30:46.837563 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_logistic.rds
2025-11-18 08:30:57.239883 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:30:57.288511 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:30:57.317361 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:30:57.326542 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:30:57.346363 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:30:57.384717 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:30:57.387346 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:30:57.392778 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:30:57.442783 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:30:57.445103 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:30:57.473261 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:30:57.489948 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:30:57.495005 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:30:57.511709 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:30:57.538961 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:31:03.135878 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:31:03.170056 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:31:03.200235 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:31:03.208838 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:31:03.222682 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:31:03.252064 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:31:03.254424 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:31:03.259154 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:31:03.297806 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:31:03.303575 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:31:03.323736 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:31:03.342821 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:31:03.348305 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:31:03.36528 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:31:03.403665 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:31:03.491001 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_linear.rds
2025-11-18 08:31:03.528003 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_linear.rds
2025-11-18 08:31:03.564417 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/residuals_logistic.rds
2025-11-18 08:31:03.75836 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc61fa7cb8/fits/fitted_logistic.rds
2025-11-18 08:31:14.273885 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:31:14.305653 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:31:14.336736 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:31:14.345464 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:31:14.361837 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:31:14.404996 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:31:14.40742 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:31:14.412665 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:31:14.452189 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:31:14.45456 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:31:14.474277 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:31:14.500107 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:31:14.50516 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:31:14.522658 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:31:14.551807 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:31:19.903754 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:31:19.971435 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:31:20.000814 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:31:20.009501 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:31:20.023212 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:31:20.05256 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:31:20.054877 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:31:20.059721 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:31:20.139352 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:31:20.14171 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:31:20.172656 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:31:20.196519 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:31:20.201264 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:31:20.222587 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:31:20.251264 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:31:32.385261 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:31:36.79469 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:31:48.886048 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:31:53.316238 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:31:53.565275 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_linear.rds
2025-11-18 08:31:53.600652 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_linear.rds
2025-11-18 08:31:53.626371 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_logistic.rds
2025-11-18 08:31:53.668673 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_logistic.rds
2025-11-18 08:32:04.83683 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:32:07.803945 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:32:07.944992 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_linear.rds
2025-11-18 08:32:07.980375 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_linear.rds
2025-11-18 08:32:08.004092 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_logistic.rds
2025-11-18 08:32:08.0465 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_logistic.rds
2025-11-18 08:32:17.481571 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:32:20.650148 WARNING::Fitting problem for feature 124 returning NA
2025-11-18 08:32:20.806643 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_linear.rds
2025-11-18 08:32:20.855546 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_linear.rds
2025-11-18 08:32:20.884571 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_logistic.rds
2025-11-18 08:32:20.938841 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_logistic.rds
2025-11-18 08:32:30.806587 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:32:30.853636 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:32:30.906516 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:32:30.915732 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:32:30.931016 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:32:30.965487 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:32:30.968308 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:32:30.97433 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:32:31.029927 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:32:31.032753 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:32:31.060819 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:32:31.081652 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:32:31.091085 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:32:31.116013 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:32:31.155046 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:32:37.469161 WARNING::Fitting problem for feature 50 returning NA
2025-11-18 08:32:37.521015 WARNING::Fitting problem for feature 62 returning NA
2025-11-18 08:32:37.557607 WARNING::Fitting problem for feature 74 returning NA
2025-11-18 08:32:37.568373 WARNING::Fitting problem for feature 78 returning NA
2025-11-18 08:32:37.589741 WARNING::Fitting problem for feature 84 returning NA
2025-11-18 08:32:37.622224 WARNING::Fitting problem for feature 96 returning NA
2025-11-18 08:32:37.624541 WARNING::Fitting problem for feature 97 returning NA
2025-11-18 08:32:37.629072 WARNING::Fitting problem for feature 99 returning NA
2025-11-18 08:32:37.670762 WARNING::Fitting problem for feature 114 returning NA
2025-11-18 08:32:37.675661 WARNING::Fitting problem for feature 115 returning NA
2025-11-18 08:32:37.695082 WARNING::Fitting problem for feature 123 returning NA
2025-11-18 08:32:37.714079 WARNING::Fitting problem for feature 130 returning NA
2025-11-18 08:32:37.719342 WARNING::Fitting problem for feature 132 returning NA
2025-11-18 08:32:37.735513 WARNING::Fitting problem for feature 139 returning NA
2025-11-18 08:32:37.76656 WARNING::Fitting problem for feature 150 returning NA
2025-11-18 08:32:37.891097 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_linear.rds
2025-11-18 08:32:37.927369 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_linear.rds
2025-11-18 08:32:37.964213 WARNING::Deleting existing residuals file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/residuals_logistic.rds
2025-11-18 08:32:38.146087 WARNING::Deleting existing fitted file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc52b9fd96/fits/fitted_logistic.rds
2025-11-18 08:32:48.944771 ERROR::Please select a normalization from the list of available options : TSS, CLR, NONE
2025-11-18 08:32:48.95142 ERROR::Please select a transform from the list of available options : LOG, PLOG, NONE
2025-11-18 08:32:48.975619 ERROR::Please select a correction method from the list of available options : BH, holm, hochberg, hommel, bonferroni, BY
2025-11-18 08:32:49.002271 ERROR::No fixed, group, or
ordered effects included in formula.
2025-11-18 08:32:49.012442 ERROR::Effect name not found in metadata: d
2025-11-18 08:32:49.017454 ERROR::No user formula provided
2025-11-18 08:32:49.030826 ERROR::Effect name not found in metadata so not applied to formula as random effect: d
2025-11-18 08:32:49.035598 ERROR::No fixed/group/ordered/
feature-specific effects provided.
2025-11-18 08:32:50.46004 INFO::Writing function arguments to log file
2025-11-18 08:32:50.466169 INFO::Verifying options selected are valid
2025-11-18 08:32:51.639688 INFO::Writing function arguments to log file
2025-11-18 08:32:51.648787 INFO::Verifying options selected are valid
2025-11-18 08:32:51.649281 INFO::Determining format of input files
2025-11-18 08:32:51.649672 INFO::Input format is data samples as rows and metadata samples as rows
2025-11-18 08:32:51.651004 INFO::Running selected normalization method: TSS
2025-11-18 08:32:51.651829 INFO::Creating output feature tables folder
2025-11-18 08:32:51.652391 INFO::Writing normalized data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/features/data_norm.tsv
2025-11-18 08:32:51.653174 INFO::Filter data based on min abundance, min prevalence, and max prevalence
2025-11-18 08:32:51.653613 INFO::Total samples in data: 16
2025-11-18 08:32:51.653943 INFO::Min samples required with min abundance for a feature not to be filtered: 0.000000
2025-11-18 08:32:51.654286 INFO::Max samples allowed with min abundance for a feature not to be filtered: 16.160000
2025-11-18 08:32:51.655061 INFO::Total filtered features: 0
2025-11-18 08:32:51.655571 INFO::Filtered feature names from abundance, min prevalence, and max prevalence filtering:
2025-11-18 08:32:51.656052 INFO::Total features filtered by non-zero variance filtering: 0
2025-11-18 08:32:51.657055 INFO::Filtered feature names from variance filtering:
2025-11-18 08:32:51.657519 INFO::Writing filtered data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/features/filtered_data.tsv
2025-11-18 08:32:51.658255 INFO::Running selected transform method: LOG
2025-11-18 08:32:51.664583 INFO::Writing normalized, filtered, transformed data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/features/data_transformed.tsv
2025-11-18 08:32:51.665619 INFO::Applying z-score to standardize continuous metadata
2025-11-18 08:32:51.671586 INFO::Running the linear model component
2025-11-18 08:32:51.677605 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:51.679577 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:51.685813 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:51.688968 INFO::Counting total values for each feature
2025-11-18 08:32:51.690138 INFO::Running the logistic model component
2025-11-18 08:32:51.700148 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:51.702767 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:51.70517 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:51.708874 INFO::Counting total values for each feature
2025-11-18 08:32:51.709869 INFO::Re-running abundances for warn_prevalence
2025-11-18 08:32:51.710362 INFO::Running selected normalization method: TSS
2025-11-18 08:32:51.710994 INFO::Running selected transform method: LOG
2025-11-18 08:32:51.716692 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:51.719169 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:51.72131 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:51.761332 INFO::Creating fits folder
2025-11-18 08:32:51.761974 INFO::Writing residuals to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/fits/residuals_linear.rds
2025-11-18 08:32:51.762513 INFO::Writing fitted values to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/fits/fitted_linear.rds
2025-11-18 08:32:51.762994 INFO::Writing residuals to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/fits/residuals_logistic.rds
2025-11-18 08:32:51.769157 INFO::Writing fitted values to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/fits/fitted_logistic.rds
2025-11-18 08:32:51.770488 INFO::Writing all the results to file (ordered
by increasing individual q-values): /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/all_results.tsv
2025-11-18 08:32:51.771286 INFO::Writing the significant results without errors (those which have joint q-values less than or equal to the threshold of 0.100000 ) to file (ordered by increasing individual q-values): /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/significant_results.tsv
2025-11-18 08:32:51.771879 INFO::Creating output figures folder
2025-11-18 08:32:51.772446 INFO::Writing summary plot of significant
results to file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/figures/summary_plot.pdf
2025-11-18 08:32:52.580271 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/figures
2025-11-18 08:32:52.581232 INFO::Plotting associations from most to least significant, grouped by metadata
2025-11-18 08:32:52.583638 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-11-18 08:32:52.885174 INFO::Writing summary plot of
significant results to file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/figures/summary_plot.pdf
2025-11-18 08:32:53.713386 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc3a800af1/figures
2025-11-18 08:32:53.714033 INFO::Plotting associations from most to least significant, grouped by metadata
2025-11-18 08:32:53.715996 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-11-18 08:32:53.959452 INFO::Running the linear model component
2025-11-18 08:32:53.962444 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:53.968025 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:53.969402 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:53.971907 INFO::Counting total values for each feature
2025-11-18 08:32:53.972517 INFO::Running the logistic model component
2025-11-18 08:32:53.975246 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:53.977478 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:53.979484 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:53.982581 INFO::Counting total values for each feature
2025-11-18 08:32:53.983338 INFO::Re-running abundances for warn_prevalence
2025-11-18 08:32:53.983589 INFO::Running selected normalization method: TSS
2025-11-18 08:32:53.98403 INFO::Running selected transform method: LOG
2025-11-18 08:32:53.986794 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:53.988266 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:53.989534 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:54.019017 INFO::Creating output folder
2025-11-18 08:32:54.019453 INFO::Creating output figures folder
2025-11-18 08:32:54.019886 INFO::Writing summary plot of significant
results to file: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc7c5e2c8c/figures/summary_plot.pdf
2025-11-18 08:32:54.857326 INFO::Writing association plots (one for each significant association) to output folder: /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc7c5e2c8c/figures
2025-11-18 08:32:54.85806 INFO::Plotting associations from most to least significant, grouped by metadata
2025-11-18 08:32:54.860449 INFO::Creating boxplot for continuous data (logistic), var1 vs a
2025-11-18 08:32:55.403867 INFO::Applying z-score to standardize continuous metadata
2025-11-18 08:32:55.407016 INFO::Factor detected for categorial metadata 'c'. Using as-is.
2025-11-18 08:32:55.407365 INFO::Bypass z-score application to metadata
2025-11-18 08:32:55.408312 INFO::Bypass z-score application to metadata
2025-11-18 08:32:55.416156 INFO::Determining format of input files
2025-11-18 08:32:55.416543 INFO::Input format is data samples as rows and metadata samples as rows
2025-11-18 08:32:55.416817 INFO::Input format is data samples as rows and feature_specific_covariate samples as rows
2025-11-18 08:32:55.419666 INFO::Determining format of input files
2025-11-18 08:32:55.420103 INFO::Input format is data samples as columns and metadata samples as rows
2025-11-18 08:32:55.420527 INFO::Input format is feature_specific_covariate samples as columns
2025-11-18 08:32:55.424319 INFO::Determining format of input files
2025-11-18 08:32:55.424805 INFO::Input format is data samples as rows and metadata samples as rows
2025-11-18 08:32:55.425195 INFO::Input format is feature_specific_covariate samples as columns
2025-11-18 08:32:55.425735 INFO::The following samples were found to have metadata but no features (or feature specific covariates if applicable). They will be removed. sample1
2025-11-18 08:32:55.426001 INFO::The following samples were found to have feature specific covariates but no features or no metadata. They will be removed. sample1
2025-11-18 08:32:55.430696 INFO::Running selected transform method: LOG
2025-11-18 08:32:55.431217 INFO::Creating output feature tables folder
2025-11-18 08:32:55.431699 INFO::Writing normalized, filtered, transformed data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc67ceeaaa/features/data_transformed.tsv
2025-11-18 08:32:55.433778 INFO::Running selected transform method: LOG
2025-11-18 08:32:55.434627 INFO::Writing normalized, filtered, transformed data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc67ceeaaa/features/data_transformed.tsv
2025-11-18 08:32:55.43617 INFO::Running selected transform method: PLOG
2025-11-18 08:32:55.436773 INFO::Writing normalized, filtered, transformed data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc67ceeaaa/features/data_transformed.tsv
2025-11-18 08:32:55.437974 INFO::Running selected transform method: NONE
2025-11-18 08:32:55.438292 INFO::Writing normalized, filtered, transformed data to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc67ceeaaa/features/data_transformed.tsv
2025-11-18 08:32:55.44174 INFO::Running the linear model component
2025-11-18 08:32:55.445866 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:55.447547 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:55.448951 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:55.451508 INFO::Counting total values for each feature
2025-11-18 08:32:55.452173 INFO::Running the logistic model component
2025-11-18 08:32:55.455061 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:55.457349 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:55.459635 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:55.463227 INFO::Counting total values for each feature
2025-11-18 08:32:55.464107 INFO::Re-running abundances for warn_prevalence
2025-11-18 08:32:55.464434 INFO::Running selected normalization method: TSS
2025-11-18 08:32:55.464955 INFO::Running selected transform method: LOG
2025-11-18 08:32:55.468096 INFO::Fitting model to feature number 1, a
2025-11-18 08:32:55.469971 INFO::Fitting model to feature number 2, b
2025-11-18 08:32:55.471541 INFO::Fitting model to feature number 3, c
2025-11-18 08:32:55.505943 INFO::Creating output folder
2025-11-18 08:32:55.506434 INFO::Creating fits folder
2025-11-18 08:32:55.506755 INFO::Writing residuals to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/fits/residuals_linear.rds
2025-11-18 08:32:55.507282 INFO::Writing fitted values to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/fits/fitted_linear.rds
2025-11-18 08:32:55.507706 INFO::Writing residuals to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/fits/residuals_logistic.rds
2025-11-18 08:32:55.508106 INFO::Writing fitted values to file /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/fits/fitted_logistic.rds
2025-11-18 08:32:55.509105 INFO::Writing all the results to file (ordered
by increasing individual q-values): /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/all_results.tsv
2025-11-18 08:32:55.509851 INFO::Writing the significant results without errors (those which have joint q-values less than or equal to the threshold of 0.100000 ) to file (ordered by increasing individual q-values): /var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T//RtmpZ42GzN/file149cc41907424/significant_results.tsv
[ FAIL 0 | WARN 16 | SKIP 0 | PASS 95 ]
[ FAIL 0 | WARN 16 | SKIP 0 | PASS 95 ]
>
>
> proc.time()
user system elapsed
154.216 2.962 177.738
maaslin3.Rcheck/maaslin3-Ex.timings
| name | user | system | elapsed | |
| maaslin3 | 8.511 | 0.340 | 10.111 | |
| maaslin_check_arguments | 0.078 | 0.001 | 0.091 | |
| maaslin_check_formula | 0.068 | 0.003 | 0.082 | |
| maaslin_compute_formula | 0.066 | 0.003 | 0.072 | |
| maaslin_contrast_test | 7.762 | 0.425 | 9.071 | |
| maaslin_filter | 0.244 | 0.015 | 0.307 | |
| maaslin_fit | 5.975 | 0.416 | 7.157 | |
| maaslin_log_arguments | 0.064 | 0.002 | 0.074 | |
| maaslin_normalize | 0.137 | 0.008 | 0.165 | |
| maaslin_plot_results | 18.156 | 0.435 | 20.387 | |
| maaslin_plot_results_from_output | 18.303 | 0.476 | 20.398 | |
| maaslin_process_metadata | 0.252 | 0.016 | 0.302 | |
| maaslin_read_data | 0.114 | 0.004 | 0.136 | |
| maaslin_reorder_data | 0.074 | 0.003 | 0.093 | |
| maaslin_transform | 0.300 | 0.023 | 0.350 | |
| maaslin_write_results | 6.420 | 0.338 | 7.552 | |
| maaslin_write_results_lefse_format | 5.936 | 0.228 | 6.847 | |
| preprocess_dna_mtx | 0.001 | 0.000 | 0.002 | |
| preprocess_taxa_mtx | 0.002 | 0.000 | 0.002 | |