Till Soerensen
| Snapshot Date: 2025-11-14 13:45 -0500 (Fri, 14 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-15 11:58 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4903 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-11-14 02:37:44 -0000 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 02:41:06 -0000 (Fri, 14 Nov 2025) |
| EllapsedTime: 202.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=159<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.05 mins(max 1: 0.05)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=90) has 3 sub-cluster at 3 (5), ICL=111<>30
split 1 into 3 clusters
cluster 2(N=214) has 2 sub-cluster at 2 (6), ICL=35<>30
split 2 into 2 clusters
cluster 1(N=90) has 3 sub-cluster at 3 (5), ICL=0<>30
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->5 N=605
EM 5 takes 0 mins, 10 iterations
cluster 1(N=66) has 3 sub-cluster at 4 (21), ICL=26<>34
cluster 5(N=20) has 2 sub-cluster at 2 (4), ICL=26<>34
cluster 3(N=57) has 3 sub-cluster at 3 (24), ICL=17<>34
cluster 2(N=71) has 3 sub-cluster at 3 (20), ICL=13<>34
cluster 4(N=396) has 5 sub-cluster at 5 (29), ICL=3<>34
cluster 1(N=66) has 3 sub-cluster at 4 (21), ICL=0<>34
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=5->5 N=1210
EM 5 takes 0.017 mins, 7 iterations
cluster 1(N=118) has 4 sub-cluster at 4 (12), ICL=43<>37
split 1 into 4 clusters
cluster 5(N=37) has 2 sub-cluster at 2 (5), ICL=32<>37
cluster 2(N=148) has 3 sub-cluster at 3 (22), ICL=15<>37
cluster 3(N=95) has 5 sub-cluster at 7 (35), ICL=14<>37
cluster 1(N=118) has 4 sub-cluster at 4 (12), ICL=0<>37
Model Refinement takes 0.1 mins(max 3: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0 mins, 14 iterations
cluster 8(N=56) has 3 sub-cluster at 3 (13), ICL=45<>41
split 8 into 3 clusters
cluster 4(N=59) has 5 sub-cluster at 6 (94), ICL=32<>41
cluster 5(N=295) has 2 sub-cluster at 2 (9), ICL=28<>41
cluster 1(N=104) has 4 sub-cluster at 4 (22), ICL=22<>41
cluster 6(N=208) has 4 sub-cluster at 4 (27), ICL=16<>41
cluster 3(N=61) has 4 sub-cluster at 4 (19), ICL=14<>41
cluster 2(N=34) has 2 sub-cluster at 2 (17), ICL=9.5<>41
cluster 7(N=1625) has 4 sub-cluster at 4 (6), ICL=5.4<>41
cluster 1(N=104) has 4 sub-cluster at 4 (22), ICL=0<>41
Model Refinement takes 0.22 mins(max 7: 0.067)
Fit Model 5 of (6/10) K=8->10 N=4841
EM 10 takes 0.017 mins, 16 iterations
cluster 7(N=3206) has 3 sub-cluster at 3 (7), ICL=54<>45
split 7 into 3 clusters
cluster 2(N=81) has 5 sub-cluster at 5 (20), ICL=33<>45
cluster 6(N=446) has 2 sub-cluster at 2 (29), ICL=33<>45
cluster 8(N=71) has 3 sub-cluster at 3 (12), ICL=27<>45
cluster 5(N=573) has 2 sub-cluster at 2 (5), ICL=26<>45
cluster 1(N=212) has 7 sub-cluster at 7 (36), ICL=20<>45
cluster 9(N=33) has 2 sub-cluster at 2 (6), ICL=16<>45
cluster 4(N=107) has 6 sub-cluster at 8 (87), ICL=14<>45
cluster 3(N=141) has 6 sub-cluster at 8 (37), ICL=13<>45
cluster 10(N=30) has 2 sub-cluster at 2 (15), ICL=7.1<>45
cluster 1(N=212) has 7 sub-cluster at 7 (36), ICL=0<>45
Model Refinement takes 0.22 mins(max 7: 0.05)
Fit Model 6 of (6/10) K=10->12 N=9682
EM 12 takes 0.033 mins, 19 iterations
cluster 6(N=905) has 2 sub-cluster at 2 (29), ICL=56<>48
split 6 into 2 clusters
cluster 10(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 1(N=391) has 2 sub-cluster at 2 (7), ICL=37<>48
cluster 11(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 5(N=1120) has 2 sub-cluster at 2 (18), ICL=27<>48
cluster 2(N=165) has 2 sub-cluster at 2 (14), ICL=17<>48
cluster 4(N=172) has 6 sub-cluster at 7 (38), ICL=14<>48
cluster 3(N=314) has 7 sub-cluster at 7 (30), ICL=13<>48
cluster 12(N=75) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 7(N=306) has 2 sub-cluster at 2 (8), ICL=5.2<>48
cluster 1(N=391) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.32 mins(max 9: 0.067)
Fit Model 7 of (6/10) K=12->13 N=9682
EM 13 takes 0.017 mins, 4 iterations
cluster 11(N=157) has 4 sub-cluster at 4 (18), ICL=45<>48
cluster 5(N=1120) has 2 sub-cluster at 2 (7), ICL=45<>48
cluster 1(N=391) has 2 sub-cluster at 2 (7), ICL=37<>48
cluster 12(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 2(N=161) has 2 sub-cluster at 2 (14), ICL=14<>48
cluster 13(N=75) has 3 sub-cluster at 4 (44), ICL=13<>48
cluster 3(N=319) has 2 sub-cluster at 2 (6), ICL=12<>48
cluster 4(N=169) has 5 sub-cluster at 7 (37), ICL=5.8<>48
cluster 8(N=305) has 2 sub-cluster at 2 (8), ICL=5.2<>48
cluster 6(N=399) has 7 sub-cluster at 8 (45), ICL=2.4<>48
cluster 1(N=391) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.32 mins(max 9: 0.067)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.4 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=155<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=101) has 3 sub-cluster at 3 (7), ICL=131<>25
split 2 into 3 clusters
cluster 1(N=202) has 3 sub-cluster at 3 (11), ICL=20<>25
cluster 1(N=202) has 3 sub-cluster at 3 (11), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 1(N=412) has 2 sub-cluster at 2 (5), ICL=59<>28
split 1 into 2 clusters
cluster 2(N=65) has 6 sub-cluster at 6 (33), ICL=17<>28
cluster 4(N=78) has 3 sub-cluster at 3 (17), ICL=13<>28
cluster 1(N=412) has 2 sub-cluster at 2 (5), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 8 iterations
cluster 4(N=106) has 3 sub-cluster at 3 (9), ICL=43<>31
split 4 into 3 clusters
cluster 2(N=22) has 3 sub-cluster at 3 (67), ICL=27<>31
cluster 3(N=121) has 2 sub-cluster at 2 (5), ICL=26<>31
cluster 5(N=143) has 4 sub-cluster at 4 (26), ICL=19<>31
cluster 1(N=826) has 4 sub-cluster at 4 (11), ICL=14<>31
cluster 1(N=826) has 4 sub-cluster at 4 (11), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 6 takes 0 mins, 14 iterations
cluster 6(N=265) has 2 sub-cluster at 2 (9), ICL=43<>34
split 6 into 2 clusters
cluster 3(N=237) has 2 sub-cluster at 2 (11), ICL=37<>34
split 3 into 2 clusters
cluster 5(N=93) has 6 sub-cluster at 6 (16), ICL=30<>34
cluster 2(N=47) has 2 sub-cluster at 2 (7), ICL=28<>34
cluster 4(N=117) has 4 sub-cluster at 4 (9), ICL=15<>34
cluster 1(N=1668) has 3 sub-cluster at 3 (5), ICL=6.2<>34
cluster 1(N=1668) has 3 sub-cluster at 3 (5), ICL=0<>34
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 6 iterations
cluster 2(N=99) has 2 sub-cluster at 2 (8), ICL=60<>37
split 2 into 2 clusters
cluster 6(N=184) has 3 sub-cluster at 3 (11), ICL=29<>37
cluster 5(N=290) has 5 sub-cluster at 5 (15), ICL=26<>37
cluster 3(N=434) has 4 sub-cluster at 4 (16), ICL=22<>37
cluster 8(N=164) has 3 sub-cluster at 3 (46), ICL=18<>37
cluster 4(N=35) has 3 sub-cluster at 4 (13), ICL=18<>37
cluster 1(N=3238) has 3 sub-cluster at 3 (7), ICL=13<>37
cluster 7(N=483) has 7 sub-cluster at 8 (23), ICL=4.2<>37
cluster 1(N=3238) has 3 sub-cluster at 3 (7), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0 mins, 5 iterations
cluster 1(N=6479) has 3 sub-cluster at 3 (7), ICL=71<>40
split 1 into 3 clusters
cluster 6(N=556) has 3 sub-cluster at 3 (7), ICL=68<>40
split 6 into 3 clusters
cluster 4(N=910) has 3 sub-cluster at 3 (7), ICL=55<>40
split 4 into 3 clusters
cluster 7(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 7 into 2 clusters
cluster 2(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 9(N=371) has 2 sub-cluster at 2 (6), ICL=19<>40
cluster 5(N=69) has 3 sub-cluster at 3 (16), ICL=18<>40
cluster 3(N=76) has 3 sub-cluster at 4 (12), ICL=7.4<>40
cluster 1(N=6479) has 3 sub-cluster at 3 (7), ICL=0<>40
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->16 N=9682
EM 16 takes 0.033 mins, 11 iterations
cluster 4(N=124) has 7 sub-cluster at 8 (27), ICL=27<>40
cluster 12(N=80) has 5 sub-cluster at 5 (25), ICL=25<>40
cluster 16(N=393) has 2 sub-cluster at 2 (6), ICL=21<>40
cluster 13(N=220) has 3 sub-cluster at 3 (17), ICL=20<>40
cluster 10(N=365) has 5 sub-cluster at 5 (28), ICL=18<>40
cluster 5(N=74) has 4 sub-cluster at 5 (99), ICL=14<>40
cluster 11(N=176) has 6 sub-cluster at 8 (39), ICL=13<>40
cluster 14(N=221) has 6 sub-cluster at 7 (32), ICL=10<>40
cluster 3(N=304) has 7 sub-cluster at 8 (42), ICL=9.7<>40
cluster 8(N=41) has 2 sub-cluster at 2 (100), ICL=5<>40
cluster 6(N=386) has 8 sub-cluster at 8 (37), ICL=3.9<>40
cluster 3(N=304) has 7 sub-cluster at 8 (42), ICL=0<>40
Model Refinement takes 0.35 mins(max 2: 0.067)
Fit Model 8 of (6/10) K=16->16 N=9682
EM 16 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted