Till Soerensen
| Snapshot Date: 2025-10-23 14:17 -0400 (Thu, 23 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 9098b87 |
| git_last_commit_date: 2025-09-18 03:52:53 -0400 (Thu, 18 Sep 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-24 12:07 -0400 (Fri, 24 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4898 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4688 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4634 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1050/2359 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.41.2 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.41.2 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-10-21 00:35:04 -0000 (Tue, 21 Oct 2025) |
| EndedAt: 2025-10-21 00:39:48 -0000 (Tue, 21 Oct 2025) |
| EllapsedTime: 283.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=170<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=78) has 2 sub-cluster at 2 (7), ICL=91<>30
split 1 into 2 clusters
cluster 2(N=224) has 2 sub-cluster at 2 (6), ICL=41<>30
split 2 into 2 clusters
cluster 1(N=78) has 2 sub-cluster at 2 (7), ICL=0<>30
Model Refinement takes 0.017 mins(max 2: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 12 iterations
cluster 1(N=83) has 2 sub-cluster at 2 (6), ICL=104<>34
split 1 into 2 clusters
cluster 4(N=49) has 4 sub-cluster at 4 (12), ICL=35<>34
split 4 into 4 clusters
cluster 2(N=69) has 2 sub-cluster at 2 (33), ICL=18<>34
cluster 3(N=409) has 8 sub-cluster at 8 (29), ICL=5.8<>34
cluster 1(N=83) has 2 sub-cluster at 2 (6), ICL=0<>34
Model Refinement takes 0.067 mins(max 3: 0.033)
Fit Model 3 of (6/10) K=4->8 N=1210
EM 8 takes 0 mins, 25 iterations
cluster 1(N=111) has 7 sub-cluster at 7 (97), ICL=26<>37
cluster 2(N=40) has 3 sub-cluster at 3 (27), ICL=21<>37
cluster 3(N=150) has 7 sub-cluster at 8 (50), ICL=16<>37
cluster 6(N=76) has 4 sub-cluster at 4 (25), ICL=12<>37
cluster 5(N=15) has 2 sub-cluster at 2 (6), ICL=5.2<>37
cluster 8(N=17) has 2 sub-cluster at 2 (17), ICL=4.9<>37
cluster 1(N=111) has 7 sub-cluster at 7 (97), ICL=0<>37
Model Refinement takes 0.1 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=8->8 N=2420
EM 8 takes 0 mins, 11 iterations
cluster 8(N=14) has 2 sub-cluster at 2 (7), ICL=25<>41
cluster 5(N=28) has 2 sub-cluster at 2 (21), ICL=24<>41
cluster 2(N=90) has 4 sub-cluster at 4 (21), ICL=22<>41
cluster 1(N=252) has 4 sub-cluster at 4 (16), ICL=22<>41
cluster 6(N=152) has 6 sub-cluster at 6 (31), ICL=21<>41
cluster 3(N=291) has 2 sub-cluster at 2 (6), ICL=12<>41
cluster 1(N=252) has 4 sub-cluster at 4 (16), ICL=0<>41
Model Refinement takes 0.13 mins(max 4: 0.05)
Fit Model 5 of (6/10) K=8->8 N=4841
EM 8 takes 0 mins, 6 iterations
cluster 7(N=36) has 3 sub-cluster at 3 (16), ICL=44<>45
cluster 6(N=274) has 3 sub-cluster at 3 (13), ICL=33<>45
cluster 2(N=188) has 5 sub-cluster at 5 (51), ICL=21<>45
cluster 4(N=3235) has 3 sub-cluster at 3 (7), ICL=20<>45
cluster 5(N=78) has 4 sub-cluster at 4 (17), ICL=17<>45
cluster 8(N=31) has 2 sub-cluster at 2 (6), ICL=16<>45
cluster 1(N=465) has 3 sub-cluster at 3 (10), ICL=10<>45
cluster 3(N=562) has 2 sub-cluster at 2 (6), ICL=10<>45
cluster 1(N=465) has 3 sub-cluster at 3 (10), ICL=0<>45
Model Refinement takes 0.17 mins(max 4: 0.05)
Fit Model 6 of (6/10) K=8->8 N=9682
EM 8 takes 0.017 mins, 4 iterations
cluster 6(N=557) has 3 sub-cluster at 3 (8), ICL=63<>48
split 6 into 3 clusters
cluster 8(N=58) has 2 sub-cluster at 2 (100), ICL=53<>48
split 8 into 2 clusters
cluster 4(N=6481) has 2 sub-cluster at 2 (8), ICL=51<>48
split 4 into 2 clusters
cluster 1(N=921) has 3 sub-cluster at 3 (8), ICL=49<>48
split 1 into 3 clusters
cluster 2(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 5(N=154) has 3 sub-cluster at 3 (16), ICL=36<>48
cluster 3(N=1119) has 2 sub-cluster at 2 (5), ICL=33<>48
cluster 7(N=74) has 2 sub-cluster at 3 (10), ICL=1.6<>48
cluster 1(N=921) has 3 sub-cluster at 3 (8), ICL=0<>48
Model Refinement takes 0.2 mins(max 4: 0.067)
Fit Model 7 of (6/10) K=8->14 N=9682
EM 14 takes 0.017 mins, 15 iterations
cluster 7(N=2246) has 2 sub-cluster at 2 (9), ICL=108<>48
split 7 into 2 clusters
cluster 4(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 8(N=147) has 3 sub-cluster at 3 (7), ICL=36<>48
cluster 13(N=49) has 2 sub-cluster at 2 (100), ICL=36<>48
cluster 5(N=1118) has 2 sub-cluster at 2 (5), ICL=34<>48
cluster 11(N=81) has 2 sub-cluster at 2 (6), ICL=17<>48
cluster 9(N=366) has 5 sub-cluster at 5 (23), ICL=14<>48
cluster 12(N=74) has 3 sub-cluster at 4 (21), ICL=13<>48
cluster 3(N=17) has 2 sub-cluster at 2 (86), ICL=8.8<>48
cluster 10(N=172) has 4 sub-cluster at 6 (27), ICL=6.6<>48
cluster 1(N=388) has 7 sub-cluster at 8 (40), ICL=1.5<>48
cluster 1(N=388) has 7 sub-cluster at 8 (40), ICL=0<>48
Model Refinement takes 0.33 mins(max 6: 0.067)
Fit Model 8 of (6/10) K=14->15 N=9682
EM 15 takes 0.05 mins, 21 iterations
cluster 4(N=391) has 2 sub-cluster at 2 (7), ICL=51<>48
split 4 into 2 clusters
cluster 9(N=146) has 3 sub-cluster at 3 (14), ICL=37<>48
cluster 5(N=1118) has 2 sub-cluster at 2 (5), ICL=34<>48
cluster 12(N=81) has 5 sub-cluster at 5 (23), ICL=23<>48
cluster 15(N=13) has 2 sub-cluster at 2 (100), ICL=17<>48
cluster 10(N=371) has 7 sub-cluster at 8 (23), ICL=14<>48
cluster 11(N=170) has 5 sub-cluster at 6 (41), ICL=10<>48
cluster 3(N=17) has 2 sub-cluster at 2 (100), ICL=8.9<>48
cluster 13(N=73) has 3 sub-cluster at 4 (36), ICL=8<>48
cluster 8(N=307) has 7 sub-cluster at 8 (27), ICL=2.6<>48
cluster 3(N=17) has 2 sub-cluster at 2 (100), ICL=0<>48
Model Refinement takes 0.32 mins(max 6: 0.067)
Fit Model 9 of (6/10) K=15->16 N=9682
EM 16 takes 0.017 mins, 3 iterations
cluster 10(N=146) has 3 sub-cluster at 3 (14), ICL=37<>48
cluster 6(N=1117) has 2 sub-cluster at 2 (6), ICL=33<>48
cluster 13(N=81) has 5 sub-cluster at 5 (23), ICL=23<>48
cluster 16(N=13) has 2 sub-cluster at 2 (100), ICL=17<>48
cluster 11(N=371) has 6 sub-cluster at 7 (20), ICL=14<>48
cluster 12(N=170) has 7 sub-cluster at 8 (42), ICL=13<>48
cluster 5(N=88) has 2 sub-cluster at 3 (38), ICL=12<>48
cluster 3(N=17) has 2 sub-cluster at 2 (19), ICL=9.2<>48
cluster 4(N=337) has 7 sub-cluster at 8 (34), ICL=8.7<>48
cluster 14(N=73) has 3 sub-cluster at 4 (36), ICL=8<>48
cluster 9(N=306) has 2 sub-cluster at 2 (11), ICL=5<>48
cluster 3(N=17) has 2 sub-cluster at 2 (19), ICL=0<>48
Model Refinement takes 0.33 mins(max 7: 0.067)
Fit Model 10 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations
Process completed at10
Major Iteration (Trans) (6/4) takes 1.8 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=157<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (8), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=90) has 3 sub-cluster at 3 (6), ICL=104<>25
split 2 into 3 clusters
cluster 1(N=214) has 5 sub-cluster at 6 (85), ICL=39<>25
split 1 into 5 clusters
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->8 N=605
EM 7 takes 0 mins, 50 iterations
cluster 7(N=55) has 2 sub-cluster at 2 (100), ICL=44<>28
split 7 into 2 clusters
cluster 1(N=19) has 2 sub-cluster at 2 (100), ICL=30<>28
split 1 into 2 clusters
cluster 6(N=56) has 5 sub-cluster at 5 (18), ICL=26<>28
cluster 5(N=68) has 2 sub-cluster at 2 (14), ICL=18<>28
cluster 4(N=120) has 4 sub-cluster at 4 (71), ICL=2.6<>28
cluster 3(N=328) has 5 sub-cluster at 6 (43), ICL=1.2<>28
cluster 1(N=19) has 2 sub-cluster at 2 (100), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=7->9 N=1210
EM 7 takes 0.017 mins, 28 iterations
cluster 6(N=127) has 2 sub-cluster at 2 (19), ICL=65<>31
split 6 into 2 clusters
cluster 5(N=157) has 7 sub-cluster at 7 (33), ICL=21<>31
cluster 1(N=26) has 3 sub-cluster at 3 (6), ICL=18<>31
cluster 7(N=102) has 2 sub-cluster at 2 (3), ICL=4.2<>31
cluster 1(N=26) has 3 sub-cluster at 3 (6), ICL=0<>31
Model Refinement takes 0.083 mins(max 3: 0.033)
Fit Model 4 of (6/10) K=7->8 N=2420
EM 7 takes 0.017 mins, 15 iterations
cluster 7(N=251) has 2 sub-cluster at 2 (17), ICL=51<>34
split 7 into 2 clusters
cluster 1(N=52) has 2 sub-cluster at 2 (11), ICL=34<>34
cluster 6(N=143) has 8 sub-cluster at 8 (43), ICL=19<>34
cluster 4(N=291) has 2 sub-cluster at 2 (6), ICL=15<>34
cluster 5(N=95) has 4 sub-cluster at 4 (24), ICL=14<>34
cluster 2(N=1066) has 3 sub-cluster at 3 (7), ICL=12<>34
cluster 1(N=52) has 2 sub-cluster at 2 (11), ICL=0<>34
Model Refinement takes 0.13 mins(max 2: 0.033)
Fit Model 5 of (6/10) K=7->8 N=4841
EM 8 takes 0.017 mins, 12 iterations
cluster 1(N=101) has 2 sub-cluster at 2 (6), ICL=57<>37
split 1 into 2 clusters
cluster 4(N=563) has 2 sub-cluster at 3 (5), ICL=38<>37
split 4 into 2 clusters
cluster 6(N=269) has 3 sub-cluster at 3 (6), ICL=31<>37
cluster 5(N=196) has 2 sub-cluster at 2 (9), ICL=28<>37
cluster 8(N=469) has 3 sub-cluster at 3 (31), ICL=25<>37
cluster 7(N=40) has 3 sub-cluster at 3 (10), ICL=13<>37
cluster 2(N=1958) has 3 sub-cluster at 3 (6), ICL=11<>37
cluster 1(N=101) has 2 sub-cluster at 2 (6), ICL=0<>37
Model Refinement takes 0.2 mins(max 2: 0.067)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 10 takes 0.017 mins, 11 iterations
cluster 8(N=555) has 3 sub-cluster at 3 (7), ICL=57<>40
split 8 into 3 clusters
cluster 10(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 10 into 3 clusters
cluster 7(N=392) has 2 sub-cluster at 2 (13), ICL=43<>40
split 7 into 2 clusters
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 6(N=454) has 2 sub-cluster at 2 (6), ICL=23<>40
cluster 3(N=3656) has 3 sub-cluster at 3 (18), ICL=19<>40
cluster 2(N=75) has 2 sub-cluster at 3 (7), ICL=1.9<>40
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.27 mins(max 3: 0.067)
Fit Model 7 of (6/10) K=10->15 N=9682
EM 15 takes 0.017 mins, 4 iterations
cluster 3(N=3531) has 4 sub-cluster at 4 (7), ICL=46<>40
split 3 into 4 clusters
cluster 15(N=52) has 2 sub-cluster at 2 (100), ICL=46<>40
split 15 into 2 clusters
cluster 12(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 1(N=124) has 2 sub-cluster at 2 (7), ICL=32<>40
cluster 9(N=244) has 3 sub-cluster at 3 (19), ICL=23<>40
cluster 11(N=102) has 3 sub-cluster at 3 (22), ICL=16<>40
cluster 2(N=74) has 3 sub-cluster at 4 (35), ICL=16<>40
cluster 7(N=220) has 4 sub-cluster at 4 (14), ICL=16<>40
cluster 10(N=281) has 3 sub-cluster at 3 (26), ICL=14<>40
cluster 8(N=217) has 7 sub-cluster at 8 (20), ICL=12<>40
cluster 6(N=441) has 7 sub-cluster at 8 (46), ICL=12<>40
cluster 14(N=557) has 4 sub-cluster at 4 (34), ICL=5.4<>40
cluster 13(N=383) has 6 sub-cluster at 6 (43), ICL=1.3<>40
cluster 1(N=124) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.35 mins(max 4: 0.067)
Fit Model 8 of (6/10) K=15->19 N=9682
EM 19 takes 0.12 mins, 50 iterations
cluster 15(N=51) has 2 sub-cluster at 2 (100), ICL=38<>40
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=32<>40
cluster 10(N=207) has 5 sub-cluster at 6 (31), ICL=22<>40
cluster 9(N=405) has 2 sub-cluster at 2 (6), ICL=20<>40
cluster 14(N=212) has 7 sub-cluster at 7 (32), ICL=18<>40
cluster 12(N=212) has 2 sub-cluster at 2 (18), ICL=17<>40
cluster 2(N=74) has 3 sub-cluster at 4 (47), ICL=16<>40
cluster 18(N=53) has 2 sub-cluster at 2 (29), ICL=15<>40
cluster 11(N=240) has 8 sub-cluster at 8 (20), ICL=14<>40
cluster 5(N=318) has 2 sub-cluster at 2 (12), ICL=12<>40
cluster 13(N=257) has 7 sub-cluster at 8 (31), ICL=11<>40
cluster 16(N=392) has 7 sub-cluster at 8 (23), ICL=5.9<>40
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.47 mins(max 7: 0.067)
Fit Model 9 of (6/10) K=19->19 N=9682
EM 19 takes 0.12 mins, 50 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.9 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted