| Back to Multiple platform build/check report for BioC 3.22: simplified long | 
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This page was generated on 2025-10-21 12:07 -0400 (Tue, 21 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 | 
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 | 
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 | 
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 900/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| goatea 0.99.9  (landing page) Maurits Unkel 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK |  | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
| To the developers/maintainers of the goatea package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/goatea.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. | 
| Package: goatea | 
| Version: 0.99.9 | 
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:goatea.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings goatea_0.99.9.tar.gz | 
| StartedAt: 2025-10-17 09:42:21 -0000 (Fri, 17 Oct 2025) | 
| EndedAt: 2025-10-17 09:46:15 -0000 (Fri, 17 Oct 2025) | 
| EllapsedTime: 234.1 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: goatea.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:goatea.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings goatea_0.99.9.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/goatea.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘goatea/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘goatea’ version ‘0.99.9’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 23 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘goatea’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
plot_ComplexHeatmap 5.044  0.248   5.407
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
goatea.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL goatea ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘goatea’ ... ** this is package ‘goatea’ version ‘0.99.9’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (goatea)
goatea.Rcheck/goatea-Ex.timings
| name | user | system | elapsed | |
| calculate_geneSetRatio | 0.094 | 0.004 | 0.102 | |
| colorify | 0.004 | 0.004 | 0.008 | |
| file_extension | 0 | 0 | 0 | |
| filter_enrichment | 0.058 | 0.000 | 0.059 | |
| get_base_folder | 0 | 0 | 0 | |
| get_ppigraph | 0.033 | 0.003 | 0.040 | |
| get_string_ppi | 0 | 0 | 0 | |
| get_terms_by_keywords | 0.000 | 0.000 | 0.001 | |
| get_visNetwork | 0.044 | 0.016 | 0.061 | |
| hexcolor2rgba | 0.000 | 0.001 | 0.002 | |
| plot_ComplexHeatmap | 5.044 | 0.248 | 5.407 | |
| plot_EnhancedVolcano | 2.168 | 0.160 | 2.378 | |
| plot_gene_effectsize_ComplexHeatmap | 2.037 | 0.124 | 2.211 | |
| plot_genelists_overlap_upsetjs | 0.063 | 0.052 | 0.121 | |
| plot_splitdot | 0.951 | 0.151 | 1.131 | |
| plot_termtree | 1.917 | 0.078 | 2.048 | |
| process_string_input | 0.001 | 0.000 | 0.000 | |
| read_validate_genelist | 0.037 | 0.004 | 0.042 | |
| run_genelists_overlap | 0.066 | 0.004 | 0.072 | |
| run_geneset_enrichment | 0.326 | 0.011 | 0.353 | |
| scale_values_between | 0 | 0 | 0 | |
| set_significant_N_genes | 0.011 | 0.000 | 0.010 | |
| wrap_hovertip | 0.003 | 0.000 | 0.003 | |
| wrap_loader | 0.074 | 0.008 | 0.084 | |