| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-15 11:58 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4903 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 481/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| crumblr 1.2.0 (landing page) Gabriel Hoffman
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
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To the developers/maintainers of the crumblr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crumblr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: crumblr |
| Version: 1.2.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:crumblr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings crumblr_1.2.0.tar.gz |
| StartedAt: 2025-11-14 08:22:34 -0000 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 08:29:42 -0000 (Fri, 14 Nov 2025) |
| EllapsedTime: 428.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: crumblr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD check --install=check:crumblr.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings crumblr_1.2.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/crumblr.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘crumblr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘crumblr’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘crumblr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
diffTree 53.366 1.260 54.800
treeTest 26.632 0.164 26.889
plotTreeTestBeta 25.735 0.247 26.076
plotTreeTest 25.311 0.199 25.597
plotForest-methods 25.024 0.370 25.483
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
crumblr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL crumblr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘crumblr’ ... ** this is package ‘crumblr’ version ‘1.2.0’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crumblr)
crumblr.Rcheck/crumblr-Ex.timings
| name | user | system | elapsed | |
| buildClusterTree | 3.055 | 0.135 | 3.289 | |
| clr | 0.002 | 0.000 | 0.001 | |
| clrInv | 0.002 | 0.000 | 0.001 | |
| crumblr | 0.122 | 0.000 | 0.122 | |
| diffTree | 53.366 | 1.260 | 54.800 | |
| dmn_mle | 0.283 | 0.012 | 0.311 | |
| logFrac | 0.073 | 0.008 | 0.082 | |
| meanSdPlot | 1.531 | 0.036 | 1.573 | |
| plotForest-methods | 25.024 | 0.370 | 25.483 | |
| plotScatterDensity | 0.403 | 0.004 | 0.409 | |
| plotTreeTest | 25.311 | 0.199 | 25.597 | |
| plotTreeTestBeta | 25.735 | 0.247 | 26.076 | |
| standardize-method | 0.305 | 0.002 | 0.309 | |
| treeTest | 26.632 | 0.164 | 26.889 | |