Multiple platform build/check report for BioC 3.22 - CHECK results for crisprDesign on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for crisprDesign on taishan

To the developers/maintainers of the crisprDesign package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crisprDesign.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: crisprDesign

Version: 1.11.1

Command: /home/biocbuild/R/R/bin/R CMD check --install=check:crisprDesign.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings crisprDesign_1.11.1.tar.gz

StartedAt: 2025-10-21 06:56:17 -0000 (Tue, 21 Oct 2025)

EndedAt: 2025-10-21 06:56:22 -0000 (Tue, 21 Oct 2025)

EllapsedTime: 5.0 seconds

RetCode: 1

Status: ERROR

CheckDir: crisprDesign.Rcheck

Warnings: NA

Command output

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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:crisprDesign.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings crisprDesign_1.11.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/crisprDesign.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘crisprDesign/DESCRIPTION’ ... OK
* this is package ‘crisprDesign’ version ‘1.11.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘BSgenome.Mmusculus.UCSC.mm10’

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.22-bioc/meat/crisprDesign.Rcheck/00check.log’
for details.

CHECK results for crisprDesign on taishan

Summary

Command output

Installation output

Tests output

Example timings