Multiple platform build/check report for BioC 3.22 - BUILD results for cisPath on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for cisPath on taishan

To the developers/maintainers of the cisPath package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cisPath.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: cisPath

Version: 1.49.1

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath

StartedAt: 2025-10-20 22:43:53 -0000 (Mon, 20 Oct 2025)

EndedAt: 2025-10-20 22:44:08 -0000 (Mon, 20 Oct 2025)

EllapsedTime: 15.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath
###
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* checking for file ‘cisPath/DESCRIPTION’ ... OK
* preparing ‘cisPath’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘cisPath’ ...
** this is package ‘cisPath’ version ‘1.49.1’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c cisPath.cpp -o cisPath.o
cisPath.cpp: In function ‘bool processWebInput(const char*, bool, bool)’:
cisPath.cpp:3555:27: error: format not a string literal and no format arguments [-Werror=format-security]
 3555 |             PRINTFUNCTION(buffer);
      |                           ^~~~~~
cc1plus: some warnings being treated as errors
make: *** [/home/biocbuild/R/R-4.5.0/etc/Makeconf:211: cisPath.o] Error 1
ERROR: compilation failed for package ‘cisPath’
* removing ‘/home/biocbuild/tmp/RtmpOGmiri/Rinst28e9870258acb/cisPath’
      -----------------------------------
ERROR: package installation failed