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This page was generated on 2026-02-05 11:57 -0500 (Thu, 05 Feb 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4888
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 180/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobroom 1.42.0  (landing page)
John D. Storey and Andrew J. Bass
Snapshot Date: 2026-02-02 13:45 -0500 (Mon, 02 Feb 2026)
git_url: https://git.bioconductor.org/packages/biobroom
git_branch: RELEASE_3_22
git_last_commit: 3f4802c
git_last_commit_date: 2025-10-29 10:28:32 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
See other builds for biobroom in R Universe.

BUILD results for biobroom on nebbiolo2

To the developers/maintainers of the biobroom package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biobroom.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biobroom
Version: 1.42.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biobroom
StartedAt: 2026-02-03 16:12:50 -0500 (Tue, 03 Feb 2026)
EndedAt: 2026-02-03 16:12:58 -0500 (Tue, 03 Feb 2026)
EllapsedTime: 8.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 biobroom
###
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* checking for file ‘biobroom/DESCRIPTION’ ... OK
* preparing ‘biobroom’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biobroom_vignette.Rmd’ using rmarkdown

Quitting from biobroom_vignette.Rmd:89-95 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::as_tibble()` instead.
---
Backtrace:
    ▆
 1. ├─utils::head(tidy(qobj))
 2. ├─generics::tidy(qobj)
 3. └─biobroom::tidy.qvalue(qobj)
 4.   └─biobroom:::finish(ret)
 5.     └─dplyr::tbl_df(x)
 6.       └─lifecycle::deprecate_stop("1.0.0", "tbl_df()", "tibble::as_tibble()")
 7.         └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'biobroom_vignette.Rmd' failed with diagnostics:
`tbl_df()` was deprecated in dplyr 1.0.0 and is now defunct.
ℹ Please use `tibble::as_tibble()` instead.
--- failed re-building ‘biobroom_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘biobroom_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted