| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-15 11:57 -0500 (Sat, 15 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4903 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 134/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| banocc 1.34.0 (landing page) George Weingart
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the banocc package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/banocc.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: banocc |
| Version: 1.34.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 banocc |
| StartedAt: 2025-11-14 16:21:27 -0500 (Fri, 14 Nov 2025) |
| EndedAt: 2025-11-14 16:24:21 -0500 (Fri, 14 Nov 2025) |
| EllapsedTime: 174.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 banocc
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* checking for file ‘banocc/DESCRIPTION’ ... OK
* preparing ‘banocc’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘banocc-vignette.Rmd’ using rmarkdown
Quitting from banocc-vignette.Rmd:259-266 [eval-convergence]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `solve.default()`:
! system is computationally singular: reciprocal condition number = 2.24411e-19
---
Backtrace:
▆
1. └─banocc::get_banocc_output(banoccfit = b_fit, eval_convergence = FALSE)
2. ├─base::aperm(...)
3. ├─base::array(...)
4. └─base::apply(...)
5. └─banocc (local) FUN(array(newX[, i], d.call, dn.call), ...)
6. ├─stats::cov2cor(solve(matrix(Oi, ncol = sqrt(length(Oi)))))
7. ├─base::solve(matrix(Oi, ncol = sqrt(length(Oi))))
8. └─base::solve.default(matrix(Oi, ncol = sqrt(length(Oi))))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'banocc-vignette.Rmd' failed with diagnostics:
system is computationally singular: reciprocal condition number = 2.24411e-19
--- failed re-building ‘banocc-vignette.Rmd’
SUMMARY: processing the following file failed:
‘banocc-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted