Multiple platform build/check report for BioC 3.22 - BUILD results for SpaceMarkers on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SpaceMarkers on nebbiolo2

To the developers/maintainers of the SpaceMarkers package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpaceMarkers.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SpaceMarkers

Version: 1.5.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpaceMarkers

StartedAt: 2025-10-23 20:14:18 -0400 (Thu, 23 Oct 2025)

EndedAt: 2025-10-23 20:17:17 -0400 (Thu, 23 Oct 2025)

EllapsedTime: 179.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 SpaceMarkers
###
##############################################################################
##############################################################################


* checking for file ‘SpaceMarkers/DESCRIPTION’ ... OK
* preparing ‘SpaceMarkers’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SpaceMarkers_vignette.Rmd’ using rmarkdown
trying URL 'https://cf.10xgenomics.com/samples/spatial-exp/1.3.0/Visium_Human_Breast_Cancer/Visium_Human_Breast_Cancer_filtered_feature_bc_matrix.h5'
Content type 'binary/octet-stream' length 23942611 bytes (22.8 MB)
==================================================
downloaded 22.8 MB

trying URL 'https://cf.10xgenomics.com/samples/spatial-exp/1.3.0/Visium_Human_Breast_Cancer/Visium_Human_Breast_Cancer_spatial.tar.gz'
Content type 'application/x-tar' length 5262726 bytes (5.0 MB)
==================================================
downloaded 5.0 MB


Quitting from SpaceMarkers_vignette.Rmd:417-429 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'hrbrthemes'
---
Backtrace:
    ▆
 1. └─base::library(hrbrthemes)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SpaceMarkers_vignette.Rmd' failed with diagnostics:
there is no package called 'hrbrthemes'
--- failed re-building ‘SpaceMarkers_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘SpaceMarkers_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted