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This page was generated on 2025-10-24 12:07 -0400 (Fri, 24 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4898
lconwaymacOS 12.7.6 Montereyx86_644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4688
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4634
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4658
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1604/2359HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PIUMA 1.5.0  (landing page)
Mattia Chiesa
Snapshot Date: 2025-10-23 14:17 -0400 (Thu, 23 Oct 2025)
git_url: https://git.bioconductor.org/packages/PIUMA
git_branch: devel
git_last_commit: a82e3e6
git_last_commit_date: 2025-04-15 13:33:33 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for PIUMA on taishan

To the developers/maintainers of the PIUMA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PIUMA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: PIUMA
Version: 1.5.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data PIUMA
StartedAt: 2025-10-21 02:04:34 -0000 (Tue, 21 Oct 2025)
EndedAt: 2025-10-21 02:06:17 -0000 (Tue, 21 Oct 2025)
EllapsedTime: 103.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data PIUMA
###
##############################################################################
##############################################################################


* checking for file ‘PIUMA/DESCRIPTION’ ... OK
* preparing ‘PIUMA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PIUMA_vignette.Rmd’ using rmarkdown

Quitting from PIUMA_vignette.Rmd:320-325 [chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getJacc(TDA_obj)["node_102_cl_1", "node_117_cl_1"]`:
! subscript out of bounds
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'PIUMA_vignette.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘PIUMA_vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘PIUMA_vignette.Rmd’

Error: Vignette re-building failed.
Execution halted