| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-10-21 12:07 -0400 (Tue, 21 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4887 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4677 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4622 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4642 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1508/2353 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OpenStats 1.21.0 (landing page) Marina Kan
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the OpenStats package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: OpenStats |
| Version: 1.21.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OpenStats_1.21.0.tar.gz |
| StartedAt: 2025-10-17 11:52:13 -0000 (Fri, 17 Oct 2025) |
| EndedAt: 2025-10-17 11:54:23 -0000 (Fri, 17 Oct 2025) |
| EllapsedTime: 130.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OpenStats.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings OpenStats_1.21.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/OpenStats.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OpenStats/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OpenStats’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OpenStats’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) OpenStatsAnalysis.Rd:108: Escaped LaTeX specials: \& \& \& \& \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.22-bioc/meat/OpenStats.Rcheck/00check.log’
for details.
OpenStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL OpenStats ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘OpenStats’ ... ** this is package ‘OpenStats’ version ‘1.21.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStats)
OpenStats.Rcheck/OpenStats-Ex.timings
| name | user | system | elapsed | |
| OpenStatsAnalysis | 2.382 | 0.092 | 2.485 | |
| OpenStatsBuilder | 0 | 0 | 0 | |
| OpenStatsComplementarySplit | 1.748 | 0.040 | 1.794 | |
| OpenStatsList | 1.389 | 0.142 | 1.597 | |
| OpenStatsReport | 2.601 | 0.378 | 3.030 | |
| plot.OpenStats | 0.771 | 0.170 | 0.990 | |
| plot.OpenStatsComplementarySplit | 1.942 | 0.214 | 2.197 | |
| plot.OpenStatsFE | 0.089 | 0.015 | 0.105 | |
| plot.OpenStatsMM | 0.748 | 0.085 | 0.852 | |
| plot.OpenStatsRR | 0.366 | 0.039 | 0.412 | |
| print.OpenStats | 0.757 | 0.156 | 0.954 | |
| print.OpenStatsComplementarySplit | 1.988 | 0.191 | 2.216 | |
| print.OpenStatsFE | 0.089 | 0.004 | 0.094 | |
| print.OpenStatsMM | 0.949 | 0.076 | 1.041 | |
| print.OpenStatsRR | 0.369 | 0.035 | 0.411 | |
| summary.OpenStats | 0.761 | 0.104 | 0.904 | |
| summary.OpenStatsComplementarySplit | 1.894 | 0.287 | 2.219 | |
| summary.OpenStatsFE | 0.093 | 0.004 | 0.099 | |
| summary.OpenStatsMM | 0.692 | 0.091 | 0.795 | |
| summary.OpenStatsRR | 0.361 | 0.031 | 0.399 | |