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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DMRcate
###
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* checking for file ‘DMRcate/DESCRIPTION’ ... OK
* preparing ‘DMRcate’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EPICv1_and_450K.Rnw’ using knitr
--- finished re-building ‘EPICv1_and_450K.Rnw’

--- re-building ‘EPICv2.Rnw’ using knitr
--- finished re-building ‘EPICv2.Rnw’

--- re-building ‘sequencing.Rnw’ using knitr

Quitting from sequencing.Rnw:123-133 [seqDMRplot1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [genome.ucsc.edu]:
SSL connection timeout
---
Backtrace:
     x
  1. +-DMRcate::DMR.plot(...)
  2. | \-Gviz::IdeogramTrack(genome = genome, chromosome = as.character(seqnames(ranges.inplot)))
  3. |   \-methods::new(...)
  4. |     +-methods::initialize(value, ...)
  5. |     \-Gviz::initialize(value, ...)
  6. |       \-Gviz (local) .local(.Object, ...)
  7. |         \-Gviz:::.cacheGenomes(genome = genome)
  8. |           +-Gviz::.doCache(...)
  9. |           | +-BiocGenerics::eval(expression, envir = callEnv)
 10. |           | \-base::eval(expression, envir = callEnv)
 11. |           |   \-base::eval(expression, envir = callEnv)
 12. |           +-Gviz::.doCache(...)
 13. |           | +-BiocGenerics::eval(expression, envir = callEnv)
 14. |           | \-base::eval(expression, envir = callEnv)
 15. |           |   \-base::eval(expression, envir = callEnv)
 16. |           +-rtracklayer::browserSession()
 17. |           \-rtracklayer::browserSession()
 18. |             +-rtracklayer::browserSession("UCSC", ...)
 19. |             \-rtracklayer::browserSession("UCSC", ...)
 20. |               \-methods::new(class, ...)
 21. |                 +-methods::initialize(value, ...)
 22. |                 \-rtracklayer::initialize(value, ...)
 23. |                   \-rtracklayer (local) .local(.Object, ...)
 24. |                     \-httr::GET(gwURL, config)
 25. |                       \-httr:::request_perform(req, hu$handle$handle)
 26. |                         +-httr:::request_fetch(req$output, req$url, handle)
 27. |                         \-httr:::request_fetch.write_memory(req$output, req$url, handle)
 28. |                           \-curl::curl_fetch_memory(url, handle = handle)
 29. \-curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sequencing.Rnw' failed with diagnostics:
Timeout was reached [genome.ucsc.edu]:
SSL connection timeout
--- failed re-building ‘sequencing.Rnw’

SUMMARY: processing the following file failed:
  ‘sequencing.Rnw’

Error: Vignette re-building failed.
Execution halted