Multiple platform build/check report for BioC 3.22 - BUILD results for DEqMS on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4879
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4670
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4604
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4669
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for DEqMS on nebbiolo2

To the developers/maintainers of the DEqMS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEqMS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: DEqMS

Version: 1.28.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DEqMS

StartedAt: 2025-12-08 17:21:33 -0500 (Mon, 08 Dec 2025)

EndedAt: 2025-12-08 17:21:52 -0500 (Mon, 08 Dec 2025)

EllapsedTime: 19.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 DEqMS
###
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* checking for file ‘DEqMS/DESCRIPTION’ ... OK
* preparing ‘DEqMS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEqMS-package-vignette.Rmd’ using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
Content type 'text/plain; charset=UTF-8' length 3515045 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

trying URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'

Quitting from DEqMS-package-vignette.Rmd:227-231 [DownloadLabelfreeData]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'
---
Backtrace:
    ▆
 1. └─utils::download.file(url2, destfile = "./PXD000279.zip", method = "auto")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DEqMS-package-vignette.Rmd' failed with diagnostics:
cannot open URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'
--- failed re-building ‘DEqMS-package-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘DEqMS-package-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted