Multiple platform build/check report for BioC 3.22 - BUILD results for CBEA on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 beta (2025-04-02 r88102) -- "How About a Twenty-Six"	4737
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 RC (2025-04-03 r88103 ucrt) -- "How About a Twenty-Six"	4524
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for CBEA on palomino8

To the developers/maintainers of the CBEA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CBEA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: CBEA

Version: 1.7.1

Command: chmod a+r CBEA -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CBEA

StartedAt: 2025-04-08 17:59:08 -0400 (Tue, 08 Apr 2025)

EndedAt: 2025-04-08 18:00:37 -0400 (Tue, 08 Apr 2025)

EllapsedTime: 88.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r CBEA -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CBEA
###
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* checking for file 'CBEA/DESCRIPTION' ... OK
* preparing 'CBEA':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'basic_usage.Rmd' using rmarkdown

Quitting from basic_usage.Rmd:206-206
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `s[[i]]`:
! subscript out of bounds
---
Backtrace:
    ▆
 1. ├─RefManageR::Citep(bib[["BiocSet"]])
 2. │ └─RefManageR::Cite(...)
 3. ├─bib[["BiocSet"]]
 4. └─utils:::`[[.bibentry`(bib, "BiocSet")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'basic_usage.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'basic_usage.Rmd'

SUMMARY: processing the following file failed:
  'basic_usage.Rmd'

Error: Vignette re-building failed.
Execution halted