Multiple platform build/check report for BioC 3.22 - BUILD results for ASURAT on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4901
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4691
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4637
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for ASURAT on taishan

To the developers/maintainers of the ASURAT package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASURAT.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: ASURAT

Version: 1.13.1

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT

StartedAt: 2025-10-23 21:47:46 -0000 (Thu, 23 Oct 2025)

EndedAt: 2025-10-23 21:48:06 -0000 (Thu, 23 Oct 2025)

EllapsedTime: 20.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data ASURAT
###
##############################################################################
##############################################################################


* checking for file ‘ASURAT/DESCRIPTION’ ... OK
* preparing ‘ASURAT’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘ASURAT’ ...
** this is package ‘ASURAT’ version ‘1.13.1’
** using staged installation
** libs
using C++ compiler: ‘aarch64-unknown-linux-gnu-g++ (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.5.0/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.5.0/site-library/Rcpp/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security  -c bubble_sort.cpp -o bubble_sort.o
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.5.0/lib -L/usr/local/lib -o ASURAT.so RcppExports.o bubble_sort.o -L/home/biocbuild/R/R-4.5.0/lib -lR
installing to /home/biocbuild/tmp/Rtmp7CY5pP/Rinst2c6b9d798e81e5/00LOCK-ASURAT/00new/ASURAT/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Error in lazyLoadDBinsertValue(data, datafile, ascii, compress, envhook) : 
  write failed
Calls: <Anonymous> ... lazyLoadDBinsertVariable -> <Anonymous> -> lazyLoadDBinsertValue
Execution halted
ERROR: lazy loading failed for package ‘ASURAT’
* removing ‘/home/biocbuild/tmp/Rtmp7CY5pP/Rinst2c6b9d798e81e5/ASURAT’
      -----------------------------------
ERROR: package installation failed