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This page was generated on 2025-09-04 15:01 -0400 (Thu, 04 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 284/432HostnameOS / ArchINSTALLBUILDCHECK
optimalFlowData 1.20.0  (landing page)
Hristo Inouzhe
Snapshot Date: 2025-09-04 07:30 -0400 (Thu, 04 Sep 2025)
git_url: https://git.bioconductor.org/packages/optimalFlowData
git_branch: RELEASE_3_21
git_last_commit: ba14c09
git_last_commit_date: 2025-04-15 10:15:13 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published


CHECK results for optimalFlowData on nebbiolo1

To the developers/maintainers of the optimalFlowData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: optimalFlowData
Version: 1.20.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.20.0.tar.gz
StartedAt: 2025-09-04 13:21:38 -0400 (Thu, 04 Sep 2025)
EndedAt: 2025-09-04 13:22:39 -0400 (Thu, 04 Sep 2025)
EllapsedTime: 60.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: optimalFlowData.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 97.4Mb
  sub-directories of 1Mb or more:
    data  97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 97.2 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.


Installation output

optimalFlowData.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL optimalFlowData
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘optimalFlowData’ ...
** this is package ‘optimalFlowData’ version ‘1.20.0’
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optimalFlowData)

Tests output


Example timings

optimalFlowData.Rcheck/optimalFlowData-Ex.timings

nameusersystemelapsed
Cytometry10.0280.0120.039
Cytometry100.0180.0070.026
Cytometry110.0230.0070.028
Cytometry120.0240.0030.028
Cytometry130.0210.0070.028
Cytometry140.0280.0080.037
Cytometry150.0110.0050.015
Cytometry160.0120.0040.015
Cytometry170.0490.0140.064
Cytometry180.0410.0150.055
Cytometry190.0220.0030.025
Cytometry20.0560.0040.062
Cytometry200.0370.0020.041
Cytometry210.0510.0010.052
Cytometry220.0200.0020.023
Cytometry230.0260.0050.031
Cytometry240.0220.0080.029
Cytometry250.0190.0080.028
Cytometry260.0200.0030.024
Cytometry270.0600.0090.069
Cytometry280.0900.0150.107
Cytometry290.0520.0140.068
Cytometry30.0110.0000.012
Cytometry300.0450.0020.048
Cytometry310.0400.0110.051
Cytometry320.0500.0020.052
Cytometry330.0600.0010.060
Cytometry340.0610.0010.063
Cytometry350.0420.0010.044
Cytometry360.0110.0010.012
Cytometry370.0110.0000.012
Cytometry380.0120.0000.011
Cytometry390.0130.0010.013
Cytometry40.0100.0010.012
Cytometry400.0270.0020.030
Cytometry50.0110.0000.012
Cytometry60.0110.0000.012
Cytometry70.0130.0000.015
Cytometry80.0090.0020.012
Cytometry90.0190.0020.021
buildDatabase0.4850.0380.522
cytometry.diagnosis0.0010.0010.002
noise.types0.0010.0010.001